========================================== See documentation/faq.html and documentation/bugreporting.html for help with installation problems. Please send EVERYTHING printed out below when reporting problems. Please check the mailing list archives and consider subscribing. https://petsc.org/release/community/mailing/ ========================================== Starting make run on login-b at Mon, 09 May 2022 10:49:34 +0100 Machine characteristics: Linux login-b 4.18.0-348.20.1.el8_5.x86_64 #1 SMP Tue Mar 8 12:56:54 EST 2022 x86_64 x86_64 x86_64 GNU/Linux ----------------------------------------- Using PETSc directory: /rds/general/user/fs2317/home/local/FreeFem-sources/3rdparty/ff-petsc/petsc-3.17.0 Using PETSc arch: fr ----------------------------------------- PETSC_VERSION_RELEASE 1 PETSC_VERSION_MAJOR 3 PETSC_VERSION_MINOR 17 PETSC_VERSION_SUBMINOR 0 PETSC_VERSION_DATE "Mar 30, 2022" PETSC_VERSION_GIT "v3.17.0" PETSC_VERSION_DATE_GIT "2022-03-30 23:25:38 -0500" PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_ PETSC_VERSION_EQ PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ----------------------------------------- Using configure Options: --prefix=/rds/general/user/fs2317/home/local/FreeFem-install/ff-petsc/r MAKEFLAGS= --with-debugging=0 COPTFLAGS="-O3 -mtune=native" CXXOPTFLAGS="-O3 -mtune=native" FOPTFLAGS="-O3 -mtune=native" --with-cxx-dialect=11 --with-ssl=0 --with-x=0 --with-fortran-bindings=0 --with-cudac=0 --with-make-np=10 --with-scalar-type=real --download-f2cblaslapack --download-metis --download-ptscotch --download-hypre --download-parmetis --download-mmg --download-parmmg --download-superlu --download-suitesparse --download-tetgen --download-slepc --download-hpddm --with-cc=gcc --with-cxx=g++ --download-mpich --with-fc=gfortran --download-slepc-configure-arguments=--download-arpack=https://github.com/prj-/arpack-ng/archive/9fc0c71.tar.gz --download-scalapack --download-mumps PETSC_ARCH=fr Using configuration flags: #define INCLUDED_PETSCCONF_H #define PETSC_ARCH "" #define PETSC_ATTRIBUTEALIGNED(size) __attribute((aligned(size))) #define PETSC_Alignx(a,b) #define PETSC_BLASLAPACK_UNDERSCORE 1 #define PETSC_CLANGUAGE_C 1 #define PETSC_CXX_RESTRICT __restrict #define PETSC_DEPRECATED_ENUM(why) __attribute((deprecated)) #define PETSC_DEPRECATED_FUNCTION(why) __attribute((deprecated)) #define PETSC_DEPRECATED_MACRO(why) _Pragma(why) #define PETSC_DEPRECATED_TYPEDEF(why) __attribute((deprecated)) #define PETSC_DIR "/rds/general/user/fs2317/home/local/FreeFem-install/ff-petsc/r" #define PETSC_DIR_SEPARATOR '/' #define PETSC_FORTRAN_CHARLEN_T size_t #define PETSC_FORTRAN_TYPE_INITIALIZE = -2 #define PETSC_FUNCTION_NAME_C __func__ #define PETSC_FUNCTION_NAME_CXX __func__ #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_ATOLL 1 #define PETSC_HAVE_ATTRIBUTEALIGNED 1 #define PETSC_HAVE_BUILTIN_EXPECT 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_CXX 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_CXX_COMPLEX_FIX 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_DLADDR 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_F2CBLASLAPACK 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_FORTRAN_FLUSH 1 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_HAVE_FORTRAN_TYPE_STAR 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_HPDDM 1 #define PETSC_HAVE_HYPRE 1 #define PETSC_HAVE_IMMINTRIN_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_METIS 1 #define PETSC_HAVE_MMAP 1 #define PETSC_HAVE_MMG 1 #define PETSC_HAVE_MPICH 1 #define PETSC_HAVE_MPICH_NUMVERSION 40001300 #define PETSC_HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE MPIR_CVAR_CH3 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_F90MODULE_VISIBILITY 1 #define PETSC_HAVE_MPI_FEATURE_DYNAMIC_WINDOW 1 #define PETSC_HAVE_MPI_GET_ACCUMULATE 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_LARGE_COUNT 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_ONE_SIDED 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_RGET 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_MUMPS 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_PACKAGES ":blaslapack:f2cblaslapack:hpddm:hypre:mathlib:metis:mmg:mpi:mpich:mumps:parmetis:parmmg:pthread:ptscotch:regex:scalapack:suitesparse:superlu:tetgen:" #define PETSC_HAVE_PARMETIS 1 #define PETSC_HAVE_PARMMG 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_PTHREAD 1 #define PETSC_HAVE_PTHREAD_BARRIER_T 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_PTSCOTCH 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_REAL___FLOAT128 1 #define PETSC_HAVE_REGEX 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_SCALAPACK 1 #define PETSC_HAVE_SCHED_CPU_SET_T 1 #define PETSC_HAVE_SCOTCH_PARMETIS_V3_NODEND 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SLEPC 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SO_REUSEADDR 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_HAVE_SUITESPARSE 1 #define PETSC_HAVE_SUPERLU 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_SYSCTL_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TETGEN 1 #define PETSC_HAVE_TETGEN_TETLIBRARY_NEEDED 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_XMMINTRIN_H 1 #define PETSC_IS_COLORING_MAX USHRT_MAX #define PETSC_IS_COLORING_VALUE_TYPE short #define PETSC_IS_COLORING_VALUE_TYPE_F integer2 #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #define PETSC_LIB_DIR "/rds/general/user/fs2317/home/local/FreeFem-install/ff-petsc/r/lib" #define PETSC_MAX_PATH_LEN 4096 #define PETSC_MEMALIGN 16 #define PETSC_MPICC_SHOW "gcc -fPIC -fstack-protector -O3 -mtune=native -I/rds/general/user/fs2317/home/local/FreeFem-install/ff-petsc/r/include -L/rds/general/user/fs2317/home/local/FreeFem-install/ff-petsc/r/lib -Wl,-rpath -Wl,/rds/general/user/fs2317/home/local/FreeFem-install/ff-petsc/r/lib -Wl,--enable-new-dtags -lmpi" #define PETSC_MPIU_IS_COLORING_VALUE_TYPE MPI_UNSIGNED_SHORT #define PETSC_PREFETCH_HINT_NTA _MM_HINT_NTA #define PETSC_PREFETCH_HINT_T0 _MM_HINT_T0 #define PETSC_PREFETCH_HINT_T1 _MM_HINT_T1 #define PETSC_PREFETCH_HINT_T2 _MM_HINT_T2 #define PETSC_PYTHON_EXE "/usr/bin/python3" #define PETSC_Prefetch(a,b,c) _mm_prefetch((const char*)(a),(c)) #define PETSC_REPLACE_DIR_SEPARATOR '\\' #define PETSC_SIGNAL_CAST #define PETSC_SIZEOF_ENUM 4 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_SLSUFFIX "so" #define PETSC_UINTPTR_T uintptr_t #define PETSC_UNUSED __attribute((unused)) #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_CTABLE 1 #define PETSC_USE_DEBUGGER "gdb" #define PETSC_USE_INFO 1 #define PETSC_USE_ISATTY 1 #define PETSC_USE_LOG 1 #define PETSC_USE_MALLOC_COALESCED 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_SINGLE_LIBRARY 1 #define PETSC_USE_SOCKET_VIEWER 1 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_USING_64BIT_PTR 1 #define PETSC_USING_F2003 1 #define PETSC_USING_F90FREEFORM 1 #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC__GNU_SOURCE 1 ----------------------------------------- Using C compile: /rds/general/user/fs2317/home/local/FreeFem-install/ff-petsc/r/bin/mpicc -o .o -c -Wall -Wwrite-strings -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -mtune=native mpicc -show: gcc -fPIC -fstack-protector -O3 -mtune=native -I/rds/general/user/fs2317/home/local/FreeFem-install/ff-petsc/r/include -L/rds/general/user/fs2317/home/local/FreeFem-install/ff-petsc/r/lib -Wl,-rpath -Wl,/rds/general/user/fs2317/home/local/FreeFem-install/ff-petsc/r/lib -Wl,--enable-new-dtags -lmpi C compiler version: gcc (GCC) 8.5.0 20210514 (Red Hat 8.5.0-4) Using C++ compile: /rds/general/user/fs2317/home/local/FreeFem-install/ff-petsc/r/bin/mpicxx -o .o -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -mtune=native -std=gnu++11 -I/rds/general/user/fs2317/home/local/FreeFem-sources/3rdparty/ff-petsc/petsc-3.17.0/include -I/rds/general/user/fs2317/home/local/FreeFem-sources/3rdparty/ff-petsc/petsc-3.17.0/fr/include -I/rds/general/user/fs2317/home/local/FreeFem-install/ff-petsc/r/include mpicxx -show: g++ -fstack-protector -O3 -mtune=native -std=gnu++11 -fPIC -I/rds/general/user/fs2317/home/local/FreeFem-install/ff-petsc/r/include -L/rds/general/user/fs2317/home/local/FreeFem-install/ff-petsc/r/lib -lmpicxx -Wl,-rpath -Wl,/rds/general/user/fs2317/home/local/FreeFem-install/ff-petsc/r/lib -Wl,--enable-new-dtags -lmpi C++ compiler version: g++ (GCC) 8.5.0 20210514 (Red Hat 8.5.0-4) Using Fortran compile: /rds/general/user/fs2317/home/local/FreeFem-install/ff-petsc/r/bin/mpif90 -o .o -c -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -mtune=native -I/rds/general/user/fs2317/home/local/FreeFem-sources/3rdparty/ff-petsc/petsc-3.17.0/include -I/rds/general/user/fs2317/home/local/FreeFem-sources/3rdparty/ff-petsc/petsc-3.17.0/fr/include -I/rds/general/user/fs2317/home/local/FreeFem-install/ff-petsc/r/include mpif90 -show: gfortran -fPIC -ffree-line-length-0 -O3 -mtune=native -I/rds/general/user/fs2317/home/local/FreeFem-install/ff-petsc/r/include -I/rds/general/user/fs2317/home/local/FreeFem-install/ff-petsc/r/include -L/rds/general/user/fs2317/home/local/FreeFem-install/ff-petsc/r/lib -lmpifort -Wl,-rpath -Wl,/rds/general/user/fs2317/home/local/FreeFem-install/ff-petsc/r/lib -Wl,--enable-new-dtags -lmpi Fortran compiler version: GNU Fortran (GCC) 8.5.0 20210514 (Red Hat 8.5.0-4) ----------------------------------------- Using C/C++ linker: /rds/general/user/fs2317/home/local/FreeFem-install/ff-petsc/r/bin/mpicc Using C/C++ flags: -Wall -Wwrite-strings -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -mtune=native Using Fortran linker: /rds/general/user/fs2317/home/local/FreeFem-install/ff-petsc/r/bin/mpif90 Using Fortran flags: -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -mtune=native ----------------------------------------- Using system modules: Using mpi.h: # 1 "/rds/general/user/fs2317/home/local/FreeFem-install/ff-petsc/r/include/mpi.h" 1 ----------------------------------------- Using libraries: -Wl,-rpath,/rds/general/user/fs2317/home/local/FreeFem-sources/3rdparty/ff-petsc/petsc-3.17.0/fr/lib -L/rds/general/user/fs2317/home/local/FreeFem-sources/3rdparty/ff-petsc/petsc-3.17.0/fr/lib -Wl,-rpath,/rds/general/user/fs2317/home/local/FreeFem-install/ff-petsc/r/lib -L/rds/general/user/fs2317/home/local/FreeFem-install/ff-petsc/r/lib -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/8 -L/usr/lib/gcc/x86_64-redhat-linux/8 -lpetsc -lHYPRE -lspqr -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lscalapack -lsuperlu -lf2clapack -lf2cblas -lparmmg -lmmg -lmmg3d -lptesmumps -lptscotchparmetis -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr -lpthread -lparmetis -lmetis -ltet -lm -lstdc++ -ldl -lmpifort -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lrt -lstdc++ -ldl ------------------------------------------ Using mpiexec: /rds/general/user/fs2317/home/local/FreeFem-install/ff-petsc/r/bin/mpiexec ------------------------------------------ Using MAKE: /usr/bin/gmake Using MAKEFLAGS: -j1 -l1 --no-print-directory -- MAKE_LOAD=1 MAKE_NP=1 PETSC_DIR=/rds/general/user/fs2317/home/local/FreeFem-sources/3rdparty/ff-petsc/petsc-3.17.0 PETSC_ARCH=fr ========================================== gmake[2]: *** [/rds/general/user/fs2317/home/local/FreeFem-sources/3rdparty/ff-petsc/petsc-3.17.0/lib/petsc/conf/rules:56: libs] Killed **************************ERROR************************************* Error during compile, check fr/lib/petsc/conf/make.log Send it and fr/lib/petsc/conf/configure.log to petsc-maint@mcs.anl.gov ******************************************************************** Finishing make run at Mon, 09 May 2022 10:50:25 +0100