================================================================================ Starting Configure Run at Tue Sep 22 14:43:31 2020 Configure Options: --with-clean=1 --prefix=/Users/nabilachour/FreeFem-install/ff-petsc/r --download-arpack=https://github.com/prj-/arpack-ng/archive/94a5e1128dce0630cf26725247e18c787ce7f877.tar.gz Working directory: /Users/nabilachour/FF++/FreeFem-sources/3rdparty/ff-petsc/petsc-6f7728a9761c25b7b2c7be97feaf14de71316cbd/fr/externalpackages/git.slepc Python version: 3.8.5 (default, Jul 21 2020, 10:48:26) [Clang 11.0.3 (clang-1103.0.32.62)] make: /usr/bin/make PETSc source directory: /Users/nabilachour/FreeFem-install/ff-petsc/r PETSc install directory: /Users/nabilachour/FreeFem-install/ff-petsc/r PETSc version: 3.13.5 SLEPc source directory: /Users/nabilachour/FF++/FreeFem-sources/3rdparty/ff-petsc/petsc-6f7728a9761c25b7b2c7be97feaf14de71316cbd/fr/externalpackages/git.slepc SLEPc install directory: /Users/nabilachour/FreeFem-install/ff-petsc/r SLEPc version: 3.13.4 Cleaning arch dir /Users/nabilachour/FF++/FreeFem-sources/3rdparty/ff-petsc/petsc-6f7728a9761c25b7b2c7be97feaf14de71316cbd/fr/externalpackages/git.slepc/installed-arch-darwin-c-opt... ================================================================================ Checking PETSc installation... - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Checking link with code: #include "petscsnes.h" int main() { Vec v; Mat m; KSP k; PetscInitializeNoArguments(); VecCreate(PETSC_COMM_WORLD,&v); MatCreate(PETSC_COMM_WORLD,&m); KSPCreate(PETSC_COMM_WORLD,&k); return 0; } - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Running command: cd /var/folders/4p/4lsnvzr955j0wmrcj9tjtgkm0000gn/T/slepc-8e41w4e2;/usr/bin/make checklink LINKFLAGS="" - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Output: /usr/local/bin/mpicc -o checklink.o -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -O3 -mtune=native -I/Users/nabilachour/FF++/FreeFem-sources/3rdparty/ff-petsc/petsc-6f7728a9761c25b7b2c7be97feaf14de71316cbd/include -I/Users/nabilachour/FF++/FreeFem-sources/3rdparty/ff-petsc/petsc-6f7728a9761c25b7b2c7be97feaf14de71316cbd/fr/include -I/Users/nabilachour/FreeFem-install/ff-petsc/r/include `pwd`/checklink.c /usr/local/bin/mpicc -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -O3 -mtune=native -o checklink checklink.o -Wl,-rpath,/Users/nabilachour/FF++/FreeFem-sources/3rdparty/ff-petsc/petsc-6f7728a9761c25b7b2c7be97feaf14de71316cbd/fr/lib -L/Users/nabilachour/FF++/FreeFem-sources/3rdparty/ff-petsc/petsc-6f7728a9761c25b7b2c7be97feaf14de71316cbd/fr/lib -Wl,-rpath,/Users/nabilachour/FreeFem-install/ff-petsc/r/lib -L/Users/nabilachour/FreeFem-install/ff-petsc/r/lib -framework Accelerate -Wl,-rpath,/usr/local/Cellar/mpich/3.3.2_1/lib -L/usr/local/Cellar/mpich/3.3.2_1/lib -Wl,-rpath,/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/10.2.0/lib/gcc/10 -L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10 -lpetsc -lHYPRE -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lscalapack -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lsuperlu -lptesmumps -lptscotchparmetis -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr -lparmetis -lmetis -ltet -lc++ -ldl -lmpifort -lmpi -lpmpi -lgfortran -lquadmath -lm -lc++ -ldl - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ================================================================================ Checking LAPACK library... === Checking all LAPACK functions... - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Checking link with code: extern void dlaev2_(); extern void dgehrd_(); extern void dlanhs_(); extern void dtrexc_(); extern void dtrevc_(); extern void dtgexc_(); extern void dtgevc_(); extern void dstedc_(); extern void dhsein_(); extern void dlarfg_(); extern void dlarf_(); extern void dlascl_(); extern void dtrsyl_(); extern void dorghr_(); extern void dsytrd_(); extern void dorgtr_(); extern void dstevr_(); extern void dbdsdc_(); extern void dlag2_(); extern void dlasv2_(); extern void dlartg_(); extern void dlaed4_(); extern void dlamrg_(); int main() { dlaev2_(); dgehrd_(); dlanhs_(); dtrexc_(); dtrevc_(); dtgexc_(); dtgevc_(); dstedc_(); dhsein_(); dlarfg_(); dlarf_(); dlascl_(); dtrsyl_(); dorghr_(); dsytrd_(); dorgtr_(); dstevr_(); dbdsdc_(); dlag2_(); dlasv2_(); dlartg_(); dlaed4_(); dlamrg_(); return 0; } - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Running command: cd /var/folders/4p/4lsnvzr955j0wmrcj9tjtgkm0000gn/T/slepc-bk64iphs;/usr/bin/make checklink LINKFLAGS="" - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Output: /usr/local/bin/mpicc -o checklink.o -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -O3 -mtune=native -I/Users/nabilachour/FF++/FreeFem-sources/3rdparty/ff-petsc/petsc-6f7728a9761c25b7b2c7be97feaf14de71316cbd/include -I/Users/nabilachour/FF++/FreeFem-sources/3rdparty/ff-petsc/petsc-6f7728a9761c25b7b2c7be97feaf14de71316cbd/fr/include -I/Users/nabilachour/FreeFem-install/ff-petsc/r/include `pwd`/checklink.c /usr/local/bin/mpicc -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -O3 -mtune=native -o checklink checklink.o -Wl,-rpath,/Users/nabilachour/FF++/FreeFem-sources/3rdparty/ff-petsc/petsc-6f7728a9761c25b7b2c7be97feaf14de71316cbd/fr/lib -L/Users/nabilachour/FF++/FreeFem-sources/3rdparty/ff-petsc/petsc-6f7728a9761c25b7b2c7be97feaf14de71316cbd/fr/lib -Wl,-rpath,/Users/nabilachour/FreeFem-install/ff-petsc/r/lib -L/Users/nabilachour/FreeFem-install/ff-petsc/r/lib -framework Accelerate -Wl,-rpath,/usr/local/Cellar/mpich/3.3.2_1/lib -L/usr/local/Cellar/mpich/3.3.2_1/lib -Wl,-rpath,/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/10.2.0/lib/gcc/10 -L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10 -lpetsc -lHYPRE -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lscalapack -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lsuperlu -lptesmumps -lptscotchparmetis -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr -lparmetis -lmetis -ltet -lc++ -ldl -lmpifort -lmpi -lpmpi -lgfortran -lquadmath -lm -lc++ -ldl - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ================================================================================ Checking SCALAPACK... - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Running command: cd /var/folders/4p/4lsnvzr955j0wmrcj9tjtgkm0000gn/T/slepc-9lztujv5;/usr/bin/make checklink LINKFLAGS="" - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Output: /usr/local/bin/mpicc -o checklink.o -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -O3 -mtune=native -I/Users/nabilachour/FF++/FreeFem-sources/3rdparty/ff-petsc/petsc-6f7728a9761c25b7b2c7be97feaf14de71316cbd/include -I/Users/nabilachour/FF++/FreeFem-sources/3rdparty/ff-petsc/petsc-6f7728a9761c25b7b2c7be97feaf14de71316cbd/fr/include -I/Users/nabilachour/FreeFem-install/ff-petsc/r/include `pwd`/checklink.c /usr/local/bin/mpicc -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -O3 -mtune=native -o checklink checklink.o -Wl,-rpath,/Users/nabilachour/FF++/FreeFem-sources/3rdparty/ff-petsc/petsc-6f7728a9761c25b7b2c7be97feaf14de71316cbd/fr/lib -L/Users/nabilachour/FF++/FreeFem-sources/3rdparty/ff-petsc/petsc-6f7728a9761c25b7b2c7be97feaf14de71316cbd/fr/lib -Wl,-rpath,/Users/nabilachour/FreeFem-install/ff-petsc/r/lib -L/Users/nabilachour/FreeFem-install/ff-petsc/r/lib -framework Accelerate -Wl,-rpath,/usr/local/Cellar/mpich/3.3.2_1/lib -L/usr/local/Cellar/mpich/3.3.2_1/lib -Wl,-rpath,/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/10.2.0/lib/gcc/10 -L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10 -lpetsc -lHYPRE -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lscalapack -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lsuperlu -lptesmumps -lptscotchparmetis -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr -lparmetis -lmetis -ltet -lc++ -ldl -lmpifort -lmpi -lpmpi -lgfortran -lquadmath -lm -lc++ -ldl - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ====== With underscore Fortran names #include "petscsnes.h" PETSC_EXTERN int pdsyev_(); PETSC_EXTERN int pdsygvx_(); PETSC_EXTERN int pdgesvd_(); int main() { Vec v; Mat m; KSP k; PetscInitializeNoArguments(); VecCreate(PETSC_COMM_WORLD,&v); MatCreate(PETSC_COMM_WORLD,&m); KSPCreate(PETSC_COMM_WORLD,&k); pdsyev_(); pdsygvx_(); pdgesvd_(); return 0; } /usr/local/bin/mpicc -o checklink.o -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -O3 -mtune=native -I/Users/nabilachour/FF++/FreeFem-sources/3rdparty/ff-petsc/petsc-6f7728a9761c25b7b2c7be97feaf14de71316cbd/include -I/Users/nabilachour/FF++/FreeFem-sources/3rdparty/ff-petsc/petsc-6f7728a9761c25b7b2c7be97feaf14de71316cbd/fr/include -I/Users/nabilachour/FreeFem-install/ff-petsc/r/include `pwd`/checklink.c /usr/local/bin/mpicc -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -O3 -mtune=native -o checklink checklink.o -Wl,-rpath,/Users/nabilachour/FF++/FreeFem-sources/3rdparty/ff-petsc/petsc-6f7728a9761c25b7b2c7be97feaf14de71316cbd/fr/lib -L/Users/nabilachour/FF++/FreeFem-sources/3rdparty/ff-petsc/petsc-6f7728a9761c25b7b2c7be97feaf14de71316cbd/fr/lib -Wl,-rpath,/Users/nabilachour/FreeFem-install/ff-petsc/r/lib -L/Users/nabilachour/FreeFem-install/ff-petsc/r/lib -framework Accelerate -Wl,-rpath,/usr/local/Cellar/mpich/3.3.2_1/lib -L/usr/local/Cellar/mpich/3.3.2_1/lib -Wl,-rpath,/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/10.2.0/lib/gcc/10 -L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10 -lpetsc -lHYPRE -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lscalapack -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lsuperlu -lptesmumps -lptscotchparmetis -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr -lparmetis -lmetis -ltet -lc++ -ldl -lmpifort -lmpi -lpmpi -lgfortran -lquadmath -lm -lc++ -ldl ================================================================================ Installing ARPACK version 3.7.0... Downloading https://github.com/prj-/arpack-ng/archive/94a5e1128dce0630cf26725247e18c787ce7f877.tar.gz to /Users/nabilachour/FF++/FreeFem-sources/3rdparty/ff-petsc/petsc-6f7728a9761c25b7b2c7be97feaf14de71316cbd/fr/externalpackages/git.slepc/installed-arch-darwin-c-opt/externalpackages/arpack-ng-3.7.0.tar.gz Uncompressing /Users/nabilachour/FF++/FreeFem-sources/3rdparty/ff-petsc/petsc-6f7728a9761c25b7b2c7be97feaf14de71316cbd/fr/externalpackages/git.slepc/installed-arch-darwin-c-opt/externalpackages/arpack-ng-3.7.0.tar.gz to directory /Users/nabilachour/FF++/FreeFem-sources/3rdparty/ff-petsc/petsc-6f7728a9761c25b7b2c7be97feaf14de71316cbd/fr/externalpackages/git.slepc/installed-arch-darwin-c-opt/externalpackages/arpack-ng-3.7.0 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Running command: cd /Users/nabilachour/FF++/FreeFem-sources/3rdparty/ff-petsc/petsc-6f7728a9761c25b7b2c7be97feaf14de71316cbd/fr/externalpackages/git.slepc/installed-arch-darwin-c-opt/externalpackages; chmod -R a+r arpack-ng-94a5e1128dce0630cf26725247e18c787ce7f877; find arpack-ng-94a5e1128dce0630cf26725247e18c787ce7f877 -type d -name "*" -exec chmod a+rx {} \; - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Output: - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Running command: autoreconf --help - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Output: Usage: /usr/local/autoconf/bin/autoreconf [OPTION]... [DIRECTORY]... Run `autoconf' (and `autoheader', `aclocal', `automake', `autopoint' (formerly `gettextize'), and `libtoolize' where appropriate) repeatedly to remake the GNU Build System files in specified DIRECTORIES and their subdirectories (defaulting to `.'). By default, it only remakes those files that are older than their sources. If you install new versions of the GNU Build System, you can make `autoreconf' remake all of the files by giving it the `--force' option. Operation modes: -h, --help print this help, then exit -V, --version print version number, then exit -v, --verbose verbosely report processing -d, --debug don't remove temporary files -f, --force consider all files obsolete -i, --install copy missing auxiliary files --no-recursive don't rebuild sub-packages -s, --symlink with -i, install symbolic links instead of copies -m, --make when applicable, re-run ./configure && make -W, --warnings=CATEGORY report the warnings falling in CATEGORY [syntax] Warning categories include: `cross' cross compilation issues `gnu' GNU coding standards (default in gnu and gnits modes) `obsolete' obsolete features or constructions `override' user redefinitions of Automake rules or variables `portability' portability issues (default in gnu and gnits modes) `syntax' dubious syntactic constructs (default) `unsupported' unsupported or incomplete features (default) `all' all the warnings `no-CATEGORY' turn off warnings in CATEGORY `none' turn off all the warnings `error' treat warnings as errors The environment variable `WARNINGS' is honored. Some subtools might support other warning types, using `all' is encouraged. Library directories: -B, --prepend-include=DIR prepend directory DIR to search path -I, --include=DIR append directory DIR to search path The environment variables AUTOM4TE, AUTOCONF, AUTOHEADER, AUTOMAKE, ACLOCAL, AUTOPOINT, LIBTOOLIZE, M4, and MAKE are honored. Report bugs to . GNU Autoconf home page: . General help using GNU software: . - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Running command: /usr/local/bin/mpif90 --version - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Output: GNU Fortran (Homebrew GCC 10.2.0) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Running command: cd /Users/nabilachour/FF++/FreeFem-sources/3rdparty/ff-petsc/petsc-6f7728a9761c25b7b2c7be97feaf14de71316cbd/fr/externalpackages/git.slepc/installed-arch-darwin-c-opt/externalpackages/arpack-ng-94a5e1128dce0630cf26725247e18c787ce7f877&& sh bootstrap && ./configure --prefix=/Users/nabilachour/FreeFem-install/ff-petsc/r CC="/usr/local/bin/mpicc" CFLAGS="-Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -O3 -mtune=native" F77="/usr/local/bin/mpif90" FFLAGS=" -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -mtune=native -fallow-argument-mismatch" FC="/usr/local/bin/mpif90" FCFLAGS=" -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -mtune=native -fallow-argument-mismatch" LIBS="-framework Accelerate" --enable-mpi MPICC="/usr/local/bin/mpicc" MPIF77="/usr/local/bin/mpif90" MPIFC="/usr/local/bin/mpif90" && /usr/bin/make && /usr/bin/make install - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Output: autoreconf: Entering directory `.' autoreconf: configure.ac: not using Gettext autoreconf: running: aclocal --force -I m4 autoreconf: configure.ac: tracing autoreconf: configure.ac: creating directory build-aux autoreconf: running: libtoolize --copy --force Can't exec "libtoolize": No such file or directory at /usr/local/mac-dev-env/autoconf-2.69/share/autoconf/Autom4te/FileUtils.pm line 345, line 4. autoreconf: failed to run libtoolize: No such file or directory autoreconf: libtoolize is needed because this package uses Libtool - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ERROR: Installation of ARPACK failed