================================================================================ Starting Configure Run at Fri Sep 8 19:25:05 2023 Configure Options: --prefix=/usr/local/ff-petsc/r --download-arpack Working directory: /root/Desktop/freefem++/FreeFem-sources/3rdparty/ff-petsc/petsc-3.19.2/fr/externalpackages/git.slepc Python version: 3.6.15 (default, Sep 8 2023, 14:29:17) [GCC 4.8.5 20150623 (Red Hat 4.8.5-16)] make: /usr/bin/gmake PETSc source directory: /usr/local/ff-petsc/r PETSc install directory: /usr/local/ff-petsc/r PETSc version: 3.19.2 SLEPc source directory: /root/Desktop/freefem++/FreeFem-sources/3rdparty/ff-petsc/petsc-3.19.2/fr/externalpackages/git.slepc SLEPc install directory: /usr/local/ff-petsc/r SLEPc version: 3.19.1 xxx==========================================================================xxx WARNING: You are requesting a prefix install but the arch directory /root/Desktop/freefem++/FreeFem-sources/3rdparty/ff-petsc/petsc-3.19.2/fr/externalpackages/git.slepc/installed-arch-linux2-c-opt already exists and may contain files from previous builds; consider adding option --with-clean xxx==========================================================================xxx Checking configure hashfile No previous hashfile found ================================================================================ Checking PETSc installation... - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Checking link with code: #include "petscsnes.h" int main() { PetscErrorCode ierr; Vec v; Mat m; KSP k; ierr = PetscInitializeNoArguments(); ierr = VecCreate(PETSC_COMM_WORLD,&v); ierr = MatCreate(PETSC_COMM_WORLD,&m); ierr = KSPCreate(PETSC_COMM_WORLD,&k); (void)ierr; return 0; } - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Running command: cd /tmp/slepc-z2ev5qnj;/usr/bin/gmake checklink LINKFLAGS="" - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Output: /root/mpich-install/bin/mpicc -o checklink.o -c -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -O3 -mtune=native -I/root/Desktop/freefem++/FreeFem-sources/3rdparty/ff-petsc/petsc-3.19.2/include -I/root/Desktop/freefem++/FreeFem-sources/3rdparty/ff-petsc/petsc-3.19.2/fr/include -I/usr/local/ff-petsc/r/include `pwd`/checklink.c /root/mpich-install/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -O3 -mtune=native -o checklink checklink.o -Wl,-rpath,/root/Desktop/freefem++/FreeFem-sources/3rdparty/ff-petsc/petsc-3.19.2/fr/lib -L/root/Desktop/freefem++/FreeFem-sources/3rdparty/ff-petsc/petsc-3.19.2/fr/lib -Wl,-rpath,/usr/local/ff-petsc/r/lib -L/usr/local/ff-petsc/r/lib -Wl,-rpath,/root/mpich-install/lib -L/root/mpich-install/lib -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -lpetsc -lHYPRE -lspqr -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -ldmumps -lmumps_common -lpord -lpthread -lscalapack -lsuperlu -lf2clapack -lf2cblas -lparmmg -lmmg -lmmg3d -lptesmumps -lptscotchparmetisv3 -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr -lpthread -lparmetis -lmetis -ltet -lm -ldl -lmpifort -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -lrt -ldl /root/Desktop/freefem++/FreeFem-sources/3rdparty/ff-petsc/petsc-3.19.2/fr/lib/libpetsc.so: undefined reference to `operator delete[](void*, unsigned long)' /root/Desktop/freefem++/FreeFem-sources/3rdparty/ff-petsc/petsc-3.19.2/fr/lib/libpetsc.so: undefined reference to `operator delete(void*, unsigned long)' /root/Desktop/freefem++/FreeFem-sources/3rdparty/ff-petsc/petsc-3.19.2/fr/lib/libpetsc.so: undefined reference to `std::__throw_out_of_range_fmt(char const*, ...)' /root/Desktop/freefem++/FreeFem-sources/3rdparty/ff-petsc/petsc-3.19.2/fr/lib/libpetsc.so: undefined reference to `__cxa_throw_bad_array_new_length' collect2: error: ld returned 1 exit status gmake[5]: *** [checklink] Error 1 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ERROR: Unable to link with PETSc