================================================================================ ================================================================================ Starting configure run at Tue, 25 Aug 2020 12:56:31 +0200 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --prefix=/home/yim/FreeFem-install-dev/ff-petsc/c MAKEFLAGS= --with-debugging=0 COPTFLAGS="-O3 -mtune=native" CXXOPTFLAGS="-O3 -mtune=native" FOPTFLAGS="-O3 -mtune=native" --with-cxx-dialect=C++11 --with-ssl=0 --with-x=0 --with-fortran-bindings=0 --with-cudac=0 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-scalar-type=complex --with-blaslapack-dir=/home/yim/FreeFem-install-dev/ff-petsc/r --with-metis-dir=/home/yim/FreeFem-install-dev/ff-petsc/r --with-ptscotch-dir=/home/yim/FreeFem-install-dev/ff-petsc/r --with-suitesparse-include=/home/yim/FreeFem-install-dev/ff-petsc/r/include --with-suitesparse-lib="-Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig" --with-parmetis-dir=/home/yim/FreeFem-install-dev/ff-petsc/r --with-tetgen-dir=/home/yim/FreeFem-install-dev/ff-petsc/r --download-slepc --download-hpddm --download-hpddm-commit=ce6ce80 --with-scalapack-dir=/home/yim/FreeFem-install-dev/ff-petsc/r --with-mumps-dir=/home/yim/FreeFem-install-dev/ff-petsc/r PETSC_ARCH=fc Working directory: /home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4 Machine platform: uname_result(system='Linux', node='fidis', release='3.10.0-957.48.1.el7.x86_64', version='#1 SMP Fri Mar 6 14:14:26 EST 2020', machine='x86_64', processor='x86_64') Python version: 3.6.8 (default, Apr 25 2019, 21:02:35) [GCC 4.8.5 20150623 (Red Hat 4.8.5-36)] ================================================================================ ================================================================================ TEST configureExternalPackagesDir from config.framework(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/framework.py:933) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:933) ================================================================================ TEST configureDebuggers from config.utilities.debuggers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/utilities/debuggers.py:21) TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:21) Find a default debugger and determine its arguments Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Checking for program /ssoft/spack/external/intel/2018.4/impi/2018.4.274/bin64/gdb...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/bin/gdb...not found Checking for program /ssoft/spack/external/intel/2018.4/vtune_amplifier_2018.4.0.573462/bin64/gdb...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/intel64/gdb...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/gdb...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/automake-1.16.1-hcxryad24zomwxmdcxh4hpbgr467xp3r/bin/gdb...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/m4-1.4.18-h33f3lybhm6walsacsss2tt2g4pkl7ue/bin/gdb...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/autoconf-2.69-56wkkjdyc5qmqx4u5rbqjqbetygrygkl/bin/gdb...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/cmake-3.14.4-kaggpee57xa4of7juzpykjw2wod4yxeh/bin/gdb...not found Checking for program /home/yim/Nek5000/bin/gdb...not found Checking for program /usr/lib64/ccache/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Defined "USE_DEBUGGER" to ""gdb"" Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Defined make macro "DSYMUTIL" to "true" Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux child config.utilities.debuggers 0.017298 ================================================================================ TEST configureDirectories from PETSc.options.petscdir(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/options/petscdir.py:23) TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 13 #define PETSC_VERSION_SUBMINOR 4 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "Aug 01, 2020" #define PETSC_VERSION_GIT "v3.13.4" #define PETSC_VERSION_DATE_GIT "2020-08-01 00:08:16 -0500" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir 0.002915 ================================================================================ TEST getDatafilespath from PETSc.options.dataFilesPath(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/options/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath 0.000331 ================================================================================ TEST configureGit from config.sourceControl(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /ssoft/spack/external/intel/2018.4/impi/2018.4.274/bin64/git...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/bin/git...not found Checking for program /ssoft/spack/external/intel/2018.4/vtune_amplifier_2018.4.0.573462/bin64/git...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/intel64/git...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/git...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/automake-1.16.1-hcxryad24zomwxmdcxh4hpbgr467xp3r/bin/git...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/m4-1.4.18-h33f3lybhm6walsacsss2tt2g4pkl7ue/bin/git...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/autoconf-2.69-56wkkjdyc5qmqx4u5rbqjqbetygrygkl/bin/git...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/cmake-3.14.4-kaggpee57xa4of7juzpykjw2wod4yxeh/bin/git...not found Checking for program /home/yim/Nek5000/bin/git...not found Checking for program /usr/lib64/ccache/git...not found Checking for program /usr/local/bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Running Executable WITHOUT threads to time it out Executing: git --version stdout: git version 1.8.3.1 child config.sourceControl 0.006055 ================================================================================ TEST configureInstallationMethod from PETSc.options.petscclone(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/options/petscclone.py:20) TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) This is a tarball installation child PETSc.options.petscclone 0.001065 ================================================================================ TEST setNativeArchitecture from PETSc.options.arch(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/options/arch.py:31) TESTING: setNativeArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:31) ================================================================================ TEST configureArchitecture from PETSc.options.arch(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/options/arch.py:43) TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:43) Checks PETSC_ARCH and sets if not set No previous hashfile found Setting hashfile: fc/lib/petsc/conf/configure-hash Deleting configure hash file: fc/lib/petsc/conf/configure-hash Unable to delete configure hash file: fc/lib/petsc/conf/configure-hash child PETSc.options.arch 0.029329 ================================================================================ TEST setInstallDir from PETSc.options.installDir(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/options/installDir.py:35) TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:35) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/home/yim/FreeFem-install-dev/ff-petsc/c" ================================================================================ TEST saveReconfigure from PETSc.options.installDir(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/options/installDir.py:80) TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:80) ================================================================================ TEST cleanConfDir from PETSc.options.installDir(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/options/installDir.py:73) TESTING: cleanConfDir from PETSc.options.installDir(config/PETSc/options/installDir.py:73) ================================================================================ TEST configureInstallDir from PETSc.options.installDir(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/options/installDir.py:57) TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:57) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/fc/lib/petsc/conf ================================================================================ TEST restoreReconfigure from PETSc.options.installDir(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/options/installDir.py:93) TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:93) child PETSc.options.installDir 0.002520 ================================================================================ TEST setExternalPackagesDir from PETSc.options.externalpackagesdir(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/options/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/options/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) child PETSc.options.externalpackagesdir 0.000402 ================================================================================ TEST configureCLanguage from PETSc.options.languages(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/options/languages.py:27) TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" Defined make macro "CLANGUAGE" to "C" child PETSc.options.languages 0.000741 ================================================================================ TEST printEnvVariables from config.setCompilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/setCompilers.py:1725) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1725) **** printenv **** LMOD_FAMILY_COMPILER_VERSION=18.0.5 MKLROOT=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl LC_PAPER=fr_FR.UTF-8 MANPATH=/ssoft/spack/external/intel/2018.4/impi/2018.4.274/man:/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/man:/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/automake-1.16.1-hcxryad24zomwxmdcxh4hpbgr467xp3r/share/man:/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/m4-1.4.18-h33f3lybhm6walsacsss2tt2g4pkl7ue/share/man:/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/autoconf-2.69-56wkkjdyc5qmqx4u5rbqjqbetygrygkl/share/man:: LMOD_FAMILY_LAPACK_VERSION=2018.5.274 XDG_SESSION_ID=143560 M4_ROOT=/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/m4-1.4.18-h33f3lybhm6walsacsss2tt2g4pkl7ue LC_ADDRESS=fr_FR.UTF-8 _ModuleTable003_=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 HOSTNAME=fidis LC_MONETARY=fr_FR.UTF-8 LMOD_FAMILY_LAPACK=intel-mkl INTEL_LICENSE_FILE=/ssoft/spack/external/intel/License SHELL=/bin/bash MPICC=mpiicc AMPLXE_ROOT=/ssoft/spack/external/intel/2018.4/vtune_amplifier_2018.4.0.573462/bin64 __LMOD_REF_COUNT_MODULEPATH=/ssoft/spack/humagne/v1/share/spack/lmod/linux-rhel7-x86_E5v4_Mellanox/intel-mpi/2018.4.274-xlcs3ye/intel-mkl/2018.5.274-rsnwv47/intel/18.0.5:1;/ssoft/spack/humagne/v1/share/spack/lmod/linux-rhel7-x86_E5v4_Mellanox/intel-mpi/2018.4.274-xlcs3ye/intel/18.0.5:1;/ssoft/spack/humagne/v1/share/spack/lmod/linux-rhel7-x86_E5v4_Mellanox/intel-mkl/2018.5.274-rsnwv47/intel/18.0.5:1;/ssoft/spack/humagne/v1/share/spack/lmod/linux-rhel7-x86_E5v4_Mellanox/intel/18.0.5:1;/ssoft/spack/stable/share/spack/lmod/linux-rhel7-x86_E5v4_Mellanox/Core:1 TERM=xterm-256color I_MPI_EXTRA_FILESYSTEM=1 I_MPI_FABRICS=shm:ofa ICCCFG=/ssoft/spack/external/intel/config/2018.4/compilers_and_libraries_2018.5.274/icl.cfg MAKEFLAGS=w ICPCCFG=/ssoft/spack/external/intel/config/2018.4/compilers_and_libraries_2018.5.274/icl.cfg HISTSIZE=1000 SSH_CLIENT=128.178.96.206 59648 22 LC_NUMERIC=fr_FR.UTF-8 I_MPI_PMI_LIBRARY=/usr/lib64/libpmi.so LMOD_PKG=/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/lmod-8.1.5-ak4i4eudvamd3itdzikoe4lfmenjtfs2/lmod/lmod LMOD_VERSION=8.1.5 CMAKE_LIBRARY_PATH=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 SSH_TTY=/dev/pts/116 __LMOD_REF_COUNT_CMAKE_PREFIX_PATH=/ssoft/spack/external/intel/2018.4/impi/2018.4.274:1;/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl:1;/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux:1;/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/automake-1.16.1-hcxryad24zomwxmdcxh4hpbgr467xp3r:1;/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/m4-1.4.18-h33f3lybhm6walsacsss2tt2g4pkl7ue:1;/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/autoconf-2.69-56wkkjdyc5qmqx4u5rbqjqbetygrygkl:1;/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/cmake-3.14.4-kaggpee57xa4of7juzpykjw2wod4yxeh:1 __LMOD_REF_COUNT_LOADEDMODULES=cmake/3.14.4:1;autoconf/2.69:1;m4/1.4.18:1;automake/1.16.1:1;intel/18.0.5:1;intel-mkl/2018.5.274:1;intel-mpi/2018.4.274:1 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MAIL=/var/spool/mail/yim I_MPI_EXTRA_FILESYSTEM_LIST=gpfs LC_IDENTIFICATION=fr_FR.UTF-8 F90=ifort PWD=/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4 _LMFILES_=/ssoft/spack/stable/share/spack/lmod/linux-rhel7-x86_E5v4_Mellanox/Core/cmake/3.14.4.lua:/ssoft/spack/stable/share/spack/lmod/linux-rhel7-x86_E5v4_Mellanox/Core/autoconf/2.69.lua:/ssoft/spack/stable/share/spack/lmod/linux-rhel7-x86_E5v4_Mellanox/Core/m4/1.4.18.lua:/ssoft/spack/stable/share/spack/lmod/linux-rhel7-x86_E5v4_Mellanox/Core/automake/1.16.1.lua:/ssoft/spack/stable/share/spack/lmod/linux-rhel7-x86_E5v4_Mellanox/Core/intel/18.0.5.lua:/ssoft/spack/humagne/v1/share/spack/lmod/linux-rhel7-x86_E5v4_Mellanox/intel/18.0.5/intel-mkl/2018.5.274.lua:/ssoft/spack/humagne/v1/share/spack/lmod/linux-rhel7-x86_E5v4_Mellanox/intel/18.0.5/intel-mpi/2018.4.274.lua INTEL_MPI_ROOT=/ssoft/spack/external/intel/2018.4/impi/2018.4.274 IFORTCFG=/ssoft/spack/external/intel/config/2018.4/compilers_and_libraries_2018.5.274/icl.cfg LANG=en_US.UTF-8 MODULEPATH=/ssoft/spack/humagne/v1/share/spack/lmod/linux-rhel7-x86_E5v4_Mellanox/intel-mpi/2018.4.274-xlcs3ye/intel-mkl/2018.5.274-rsnwv47/intel/18.0.5:/ssoft/spack/humagne/v1/share/spack/lmod/linux-rhel7-x86_E5v4_Mellanox/intel-mpi/2018.4.274-xlcs3ye/intel/18.0.5:/ssoft/spack/humagne/v1/share/spack/lmod/linux-rhel7-x86_E5v4_Mellanox/intel-mkl/2018.5.274-rsnwv47/intel/18.0.5:/ssoft/spack/humagne/v1/share/spack/lmod/linux-rhel7-x86_E5v4_Mellanox/intel/18.0.5:/ssoft/spack/stable/share/spack/lmod/linux-rhel7-x86_E5v4_Mellanox/Core MPIFC=mpiifort _ModuleTable_Sz_=7 LMOD_SYSTEM_NAME=x86_E5v4_Mellanox LOADEDMODULES=cmake/3.14.4:autoconf/2.69:m4/1.4.18:automake/1.16.1:intel/18.0.5:intel-mkl/2018.5.274:intel-mpi/2018.4.274 LC_MEASUREMENT=fr_FR.UTF-8 F77=ifort LMOD_CMD=/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/lmod-8.1.5-ak4i4eudvamd3itdzikoe4lfmenjtfs2/lmod/lmod/libexec/lmod 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AUTOMAKE_ROOT=/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/automake-1.16.1-hcxryad24zomwxmdcxh4hpbgr467xp3r INTEL_ROOT=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux _ModuleTable002_=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 no_proxy=10.91.10.254,fadmin1,fadmin2,.fidis,.epfl.ch,localhost,127.0.0.1,fdata1,fdata2 INTEL_MKL_ROOT=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl FC=ifort HTTP_PROXY=http://fadmin1:80 AUTOCONF_ROOT=/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/autoconf-2.69-56wkkjdyc5qmqx4u5rbqjqbetygrygkl LOGNAME=yim MPIF77=mpiifort SSH_CONNECTION=128.178.96.206 59648 10.91.9.1 22 SYS_TYPE=x86_E5v4_Mellanox MODULESHOME=/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/lmod-8.1.5-ak4i4eudvamd3itdzikoe4lfmenjtfs2/lmod/lmod LESSOPEN=||/usr/bin/lesspipe.sh %s __LMOD_REF_COUNT_LD_LIBRARY_PATH=/ssoft/spack/external/intel/2018.4/impi/2018.4.274/lib64:1;/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib:1 LMOD_SETTARG_FULL_SUPPORT=no FTP_proxy=http://fadmin1:80 LMOD_MPI_VERSION=2018.4.274-xlcs3ye LMOD_FAMILY_COMPILER=intel XDG_RUNTIME_DIR=/run/user/187942 CMAKE_PREFIX_PATH=/ssoft/spack/external/intel/2018.4/impi/2018.4.274:/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl:/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux:/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/automake-1.16.1-hcxryad24zomwxmdcxh4hpbgr467xp3r:/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/m4-1.4.18-h33f3lybhm6walsacsss2tt2g4pkl7ue:/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/autoconf-2.69-56wkkjdyc5qmqx4u5rbqjqbetygrygkl:/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/cmake-3.14.4-kaggpee57xa4of7juzpykjw2wod4yxeh __LMOD_REF_COUNT_INTEL_LICENSE_FILE=/ssoft/spack/external/intel/License:1 CC=icc LMOD_DIR=/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/lmod-8.1.5-ak4i4eudvamd3itdzikoe4lfmenjtfs2/lmod/lmod/libexec CMAKE_ROOT=/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/cmake-3.14.4-kaggpee57xa4of7juzpykjw2wod4yxeh LMOD_LAPACK_VERSION=2018.5.274-rsnwv47 __LMOD_REF_COUNT_MANPATH=/ssoft/spack/external/intel/2018.4/impi/2018.4.274/man:1;/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/man:1;/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/automake-1.16.1-hcxryad24zomwxmdcxh4hpbgr467xp3r/share/man:1;/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/m4-1.4.18-h33f3lybhm6walsacsss2tt2g4pkl7ue/share/man:1;/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/autoconf-2.69-56wkkjdyc5qmqx4u5rbqjqbetygrygkl/share/man:1 _ModuleTable006_=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 LC_TIME=fr_FR.UTF-8 proxy_host=fadmin1 MPIF90=mpiifort LMOD_FAMILY_MPI=intel-mpi LC_NAME=fr_FR.UTF-8 MPICXX=mpiicpc I_MPI_ROOT=/ssoft/spack/external/intel/2018.4/impi/2018.4.274 BASH_FUNC_module()=() { eval $($LMOD_CMD bash "$@") && eval $(${LMOD_SETTARG_CMD:-:} -s sh) } BASH_FUNC_ml()=() { eval $($LMOD_DIR/ml_cmd "$@") } ================================================================================ TEST resetEnvCompilers from config.setCompilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/setCompilers.py:1732) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1732) CC (set to icc) found in environment variables - ignoring since also set on command line CXX (set to icpc) found in environment variables - ignoring since also set on command line FC (set to ifort) found in environment variables - ignoring since also set on command line =============================================================================== ***** WARNING: F77 (set to ifort) found in environment variables - ignoring use ./configure F77=$F77 if you really want to use that value ****** =============================================================================== =============================================================================== ***** WARNING: F90 (set to ifort) found in environment variables - ignoring use ./configure F90=$F90 if you really want to use that value ****** =============================================================================== MAKEFLAGS (set to w) found in environment variables - ignoring since also set on command line ================================================================================ TEST checkEnvCompilers from config.setCompilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/setCompilers.py:1762) TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1762) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/setCompilers.py:1695) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1695) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/setCompilers.py:1716) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1716) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkInitialFlags from config.setCompilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/setCompilers.py:460) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:460) Initialize the compiler and linker flags Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/setCompilers.py:635) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:635) Locate a functional C compiler Checking for program /ssoft/spack/external/intel/2018.4/impi/2018.4.274/bin64/mpiicc...found Defined make macro "CC" to "mpiicc" All intermediate test results are stored in /tmp/petsc-xt4fpc64 All intermediate test results are stored in /tmp/petsc-xt4fpc64/config.setCompilers Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers /tmp/petsc-xt4fpc64/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers /tmp/petsc-xt4fpc64/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers /tmp/petsc-xt4fpc64/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers /tmp/petsc-xt4fpc64/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o Testing executable /tmp/petsc-xt4fpc64/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-xt4fpc64/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-xt4fpc64/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: mpiicc --version stdout: icc (ICC) 18.0.5 20180823 Copyright (C) 1985-2018 Intel Corporation. All rights reserved. Since MPI c compiler starts with mpi, force searches for other compilers to only look for MPI compilers ================================================================================ TEST checkCPreprocessor from config.setCompilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/setCompilers.py:674) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:674) Locate a functional C preprocessor Checking for program /ssoft/spack/external/intel/2018.4/impi/2018.4.274/bin64/mpiicc...found Defined make macro "CPP" to "mpiicc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers /tmp/petsc-xt4fpc64/config.setCompilers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : ================================================================================ TEST checkCUDACompiler from config.setCompilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/setCompilers.py:710) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:710) Locate a functional CUDA compiler ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/setCompilers.py:750) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:750) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/setCompilers.py:849) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:849) Locate a functional Cxx compiler Checking for program /ssoft/spack/external/intel/2018.4/impi/2018.4.274/bin64/mpiicpc...found Defined make macro "CXX" to "mpiicpc" Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers /tmp/petsc-xt4fpc64/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers /tmp/petsc-xt4fpc64/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicpc -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers /tmp/petsc-xt4fpc64/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicpc -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers /tmp/petsc-xt4fpc64/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicpc -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o Testing executable /tmp/petsc-xt4fpc64/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-xt4fpc64/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-xt4fpc64/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: mpiicpc --version stdout: icpc (ICC) 18.0.5 20180823 Copyright (C) 1985-2018 Intel Corporation. All rights reserved. ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/setCompilers.py:890) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:890) Locate a functional Cxx preprocessor Checking for program /ssoft/spack/external/intel/2018.4/impi/2018.4.274/bin64/mpiicpc...found Defined make macro "CXXPP" to "mpiicpc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicpc -E -I/tmp/petsc-xt4fpc64/config.setCompilers /tmp/petsc-xt4fpc64/config.setCompilers/conftest.cc Preprocess stderr before filtering: : Preprocess stderr after filtering: : ================================================================================ TEST checkFortranCompiler from config.setCompilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/setCompilers.py:991) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:991) Locate a functional Fortran compiler Checking for program /ssoft/spack/external/intel/2018.4/impi/2018.4.274/bin64/mpiifort...found Defined make macro "FC" to "mpiifort" Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers /tmp/petsc-xt4fpc64/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers /tmp/petsc-xt4fpc64/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: mpiifort -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers /tmp/petsc-xt4fpc64/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: mpiifort -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers /tmp/petsc-xt4fpc64/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: mpiifort -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o Testing executable /tmp/petsc-xt4fpc64/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-xt4fpc64/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-xt4fpc64/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: mpiifort --version stdout: ifort (IFORT) 18.0.5 20180823 Copyright (C) 1985-2018 Intel Corporation. All rights reserved. ================================================================================ TEST checkFortranPreprocessor from config.setCompilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/setCompilers.py:1028) TESTING: checkFortranPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1028) Locate a functional Fortran preprocessor Checking for program /ssoft/spack/external/intel/2018.4/impi/2018.4.274/bin64/mpiifort...found Defined make macro "FPP" to "mpiifort -E" Deleting "FPP" Checking for program /ssoft/spack/external/intel/2018.4/impi/2018.4.274/bin64/mpiifort...found Defined make macro "FPP" to "mpiifort --use cpp32" Deleting "FPP" ================================================================================ TEST checkFortranComments from config.setCompilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/setCompilers.py:1050) TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:1050) Make sure fortran comment "!" works Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers /tmp/petsc-xt4fpc64/config.setCompilers/conftest.F90 Successful compile: Source: program main ! comment end Fortran comments can use ! in column 1 ================================================================================ TEST checkLargeFileIO from config.setCompilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/setCompilers.py:1181) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1181) ================================================================================ TEST checkArchiver from config.setCompilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/setCompilers.py:1280) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1280) Check that the archiver exists and can make a library usable by the compiler Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar version 2.27-34.base.el7_6.3 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar version 2.27-34.base.el7_6.3 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers /tmp/petsc-xt4fpc64/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /ssoft/spack/external/intel/2018.4/impi/2018.4.274/bin64/ar...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/bin/ar...not found Checking for program /ssoft/spack/external/intel/2018.4/vtune_amplifier_2018.4.0.573462/bin64/ar...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/intel64/ar...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/ar...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/automake-1.16.1-hcxryad24zomwxmdcxh4hpbgr467xp3r/bin/ar...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/m4-1.4.18-h33f3lybhm6walsacsss2tt2g4pkl7ue/bin/ar...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/autoconf-2.69-56wkkjdyc5qmqx4u5rbqjqbetygrygkl/bin/ar...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/cmake-3.14.4-kaggpee57xa4of7juzpykjw2wod4yxeh/bin/ar...not found Checking for program /home/yim/Nek5000/bin/ar...not found Checking for program /usr/lib64/ccache/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /ssoft/spack/external/intel/2018.4/impi/2018.4.274/bin64/ranlib...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/bin/ranlib...not found Checking for program /ssoft/spack/external/intel/2018.4/vtune_amplifier_2018.4.0.573462/bin64/ranlib...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/intel64/ranlib...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/ranlib...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/automake-1.16.1-hcxryad24zomwxmdcxh4hpbgr467xp3r/bin/ranlib...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/m4-1.4.18-h33f3lybhm6walsacsss2tt2g4pkl7ue/bin/ranlib...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/autoconf-2.69-56wkkjdyc5qmqx4u5rbqjqbetygrygkl/bin/ranlib...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/cmake-3.14.4-kaggpee57xa4of7juzpykjw2wod4yxeh/bin/ranlib...not found Checking for program /home/yim/Nek5000/bin/ranlib...not found Checking for program /usr/lib64/ccache/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Running Executable WITHOUT threads to time it out Executing: /usr/bin/ar cr /tmp/petsc-xt4fpc64/config.setCompilers/libconf1.a /tmp/petsc-xt4fpc64/config.setCompilers/conf1.o Running Executable WITHOUT threads to time it out Executing: /usr/bin/ranlib -c /tmp/petsc-xt4fpc64/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- 'c' Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar version 2.27-34.base.el7_6.3 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar version 2.27-34.base.el7_6.3 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers /tmp/petsc-xt4fpc64/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /ssoft/spack/external/intel/2018.4/impi/2018.4.274/bin64/ar...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/bin/ar...not found Checking for program /ssoft/spack/external/intel/2018.4/vtune_amplifier_2018.4.0.573462/bin64/ar...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/intel64/ar...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/ar...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/automake-1.16.1-hcxryad24zomwxmdcxh4hpbgr467xp3r/bin/ar...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/m4-1.4.18-h33f3lybhm6walsacsss2tt2g4pkl7ue/bin/ar...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/autoconf-2.69-56wkkjdyc5qmqx4u5rbqjqbetygrygkl/bin/ar...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/cmake-3.14.4-kaggpee57xa4of7juzpykjw2wod4yxeh/bin/ar...not found Checking for program /home/yim/Nek5000/bin/ar...not found Checking for program /usr/lib64/ccache/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /ssoft/spack/external/intel/2018.4/impi/2018.4.274/bin64/ranlib...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/bin/ranlib...not found Checking for program /ssoft/spack/external/intel/2018.4/vtune_amplifier_2018.4.0.573462/bin64/ranlib...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/intel64/ranlib...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/ranlib...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/automake-1.16.1-hcxryad24zomwxmdcxh4hpbgr467xp3r/bin/ranlib...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/m4-1.4.18-h33f3lybhm6walsacsss2tt2g4pkl7ue/bin/ranlib...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/autoconf-2.69-56wkkjdyc5qmqx4u5rbqjqbetygrygkl/bin/ranlib...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/cmake-3.14.4-kaggpee57xa4of7juzpykjw2wod4yxeh/bin/ranlib...not found Checking for program /home/yim/Nek5000/bin/ranlib...not found Checking for program /usr/lib64/ccache/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Running Executable WITHOUT threads to time it out Executing: /usr/bin/ar cr /tmp/petsc-xt4fpc64/config.setCompilers/libconf1.a /tmp/petsc-xt4fpc64/config.setCompilers/conf1.o Running Executable WITHOUT threads to time it out Executing: /usr/bin/ranlib /tmp/petsc-xt4fpc64/config.setCompilers/libconf1.a Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers /tmp/petsc-xt4fpc64/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -L/tmp/petsc-xt4fpc64/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" ================================================================================ TEST checkSharedLinker from config.setCompilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/setCompilers.py:1394) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1394) Check that the linker can produce shared libraries Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Checking shared linker mpiicc using flags ['-shared'] Checking for program /ssoft/spack/external/intel/2018.4/impi/2018.4.274/bin64/mpiicc...found Defined make macro "LD_SHARED" to "mpiicc" Trying C compiler flag Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers /tmp/petsc-xt4fpc64/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers /tmp/petsc-xt4fpc64/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest -shared /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: ld: /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o: relocation R_X86_64_PC32 against symbol `__intel_new_feature_proc_init' can not be used when making a shared object; recompile with -fPIC ld: final link failed: Bad value Rejecting linker flag -shared due to nonzero status from link Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers /tmp/petsc-xt4fpc64/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.setCompilers/libconftest.so /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: /lib/../lib64/crt1.o: In function `_start': (.text+0x20): undefined reference to `main' Rejected C compiler flag because it was not compatible with shared linker mpiicc using flags ['-shared'] Running Executable WITHOUT threads to time it out Executing: mpiicc --help | head -n 20 stdout: Intel(R) C++ Compiler Help ========================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: icc [options] file1 [file2 ...] icpc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .c++ .i .ii), assembly (.s .S), object (.o), static library (.a), or other linkable file Trying C compiler flag -PIC Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -PIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: icc: command line warning #10006: ignoring unknown option '-PIC' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -PIC due to icc: command line warning #10006: ignoring unknown option '-PIC' Rejected C compiler flag -PIC because it was not compatible with shared linker mpiicc using flags ['-shared'] Trying C compiler flag -fPIC Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fPIC Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest -shared -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o Valid C linker flag -shared Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -L/tmp/petsc-xt4fpc64/config.setCompilers -lconftest Using shared linker mpiicc with flags ['-shared'] and library extension so Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ TEST checkPIC from config.setCompilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/setCompilers.py:1128) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1128) Determine the PIC option for each compiler Trying Cxx for PIC code without any compiler flag Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers /tmp/petsc-xt4fpc64/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers /tmp/petsc-xt4fpc64/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: ld: /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o: relocation R_X86_64_32 against `.rodata.str1.4' can not be used when making a shared object; recompile with -fPIC ld: final link failed: Nonrepresentable section on output Rejected Cxx compiler flag because shared linker cannot handle it Running Executable WITHOUT threads to time it out Executing: mpiicpc --help | head -n 20 stdout: Intel(R) C++ Compiler Help ========================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: icc [options] file1 [file2 ...] icpc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .c++ .i .ii), assembly (.s .S), object (.o), static library (.a), or other linkable file Trying Cxx compiler flag -PIC for PIC code Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -PIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.cc Possible ERROR while running compiler: stderr: icpc: command line warning #10006: ignoring unknown option '-PIC' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -PIC due to icpc: command line warning #10006: ignoring unknown option '-PIC' Rejected Cxx compiler flag -PIC because shared linker cannot handle it Trying Cxx compiler flag -fPIC for PIC code Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fPIC Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o Accepted Cxx compiler flag -fPIC for PIC code Trying FC for PIC code without any compiler flag Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers /tmp/petsc-xt4fpc64/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers /tmp/petsc-xt4fpc64/config.setCompilers/conftest.F90 Successful compile: Source: function foo(a) real:: a,x,bar common /xx/ x x=a foo = bar(x) end Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: ld: /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o: relocation R_X86_64_32 against undefined symbol `xx_' can not be used when making a shared object; recompile with -fPIC ld: final link failed: Nonrepresentable section on output Rejected FC compiler flag because shared linker cannot handle it Running Executable WITHOUT threads to time it out Executing: mpiifort --help | head -n 20 stdout: Intel(R) Fortran Compiler Help ============================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: ifort [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a Fortran source (.f .for .ftn .f90 .fpp .F .FOR .F90 .i .i90), assembly (.s .S), object (.o), static library (.a), or other linkable file Trying FC compiler flag -PIC for PIC code Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -PIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.F90 Possible ERROR while running compiler: stderr: ifort: command line warning #10006: ignoring unknown option '-PIC' Source: program main end Rejecting compiler flag -PIC due to ifort: command line warning #10006: ignoring unknown option '-PIC' Rejected FC compiler flag -PIC because shared linker cannot handle it Trying FC compiler flag -fPIC for PIC code Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -fPIC Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.F90 Successful compile: Source: function foo(a) real:: a,x,bar common /xx/ x x=a foo = bar(x) end Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o Accepted FC compiler flag -fPIC for PIC code ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/setCompilers.py:1506) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1506) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: mpiicc -V stdout: GNU ld version 2.27-34.base.el7_6.3 Trying C linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest -Wl,-rpath,/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4 -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4 Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: mpiicc -V stdout: GNU ld version 2.27-34.base.el7_6.3 Trying Cxx linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicpc -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest -Wl,-rpath,/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4 /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4 Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: mpiicc -V stdout: GNU ld version 2.27-34.base.el7_6.3 Trying FC linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: mpiifort -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest -Wl,-rpath,/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4 -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o Valid FC linker flag -Wl,-rpath,/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4 ================================================================================ TEST checkLibC from config.setCompilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/setCompilers.py:1541) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1541) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/setCompilers.py:1587) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1587) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h All intermediate test results are stored in /tmp/petsc-xt4fpc64/config.headers Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] All intermediate test results are stored in /tmp/petsc-xt4fpc64/config.libraries Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -fPIC /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC /tmp/petsc-xt4fpc64/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Adding ['dl'] to LIBS Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Checking dynamic linker mpiicc using flags ['-shared'] Checking for program /ssoft/spack/external/intel/2018.4/impi/2018.4.274/bin64/mpiicc...found Defined make macro "DYNAMICLINKER" to "mpiicc" Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest -shared -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -ldl Valid C linker flag -shared Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -ldl Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { void *handle = dlopen("/tmp/petsc-xt4fpc64/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -ldl Using dynamic linker mpiicc with flags ['-shared'] and library extension so ================================================================================ TEST output from config.setCompilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/setCompilers.py:1636) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1636) Output module data as defines and substitutions Substituting "CC" with "mpiicc" Substituting "CFLAGS" with " -fPIC" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "mpiicc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "mpiicpc" Substituting "CXX_CXXFLAGS" with " -fPIC" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXPP" with "mpiicpc -E" Substituting "CXXPPFLAGS" with "" Substituting "FC" with "mpiifort" Substituting "FFLAGS" with " -fPIC" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" child config.setCompilers 9.727117 ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/options/sharedLibraries.py:36) TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:36) ================================================================================ TEST configureSharedLibraries from PETSc.options.sharedLibraries(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/options/sharedLibraries.py:52) TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:52) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Defined make rule "shared_arch" with dependencies "shared_linux" and code [] Defined make macro "SONAME_FUNCTION" to "$(1).so.$(2)" Defined make macro "SL_LINKER_FUNCTION" to "-shared -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2))" Running Executable WITHOUT threads to time it out Executing: mpiicc -v stdout: mpiicc for the Intel(R) MPI Library 2018 Update 4 for Linux* Copyright(C) 2003-2018, Intel Corporation. All rights reserved. Defined make macro "BUILDSHAREDLIB" to "yes" Defined "USE_SHARED_LIBRARIES" to "1" ================================================================================ TEST configureDynamicLibraries from PETSc.options.sharedLibraries(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/options/sharedLibraries.py:97) TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:97) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ================================================================================ TEST configureSerializedFunctions from PETSc.options.sharedLibraries(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/options/sharedLibraries.py:103) TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:103) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries child PETSc.options.sharedLibraries 0.107753 ================================================================================ TEST configureIndexSize from PETSc.options.indexTypes(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/options/indexTypes.py:39) TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:39) Defined make macro "PETSC_INDEX_SIZE" to "32" child PETSc.options.indexTypes 0.000782 ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/compilerFlags.py:72) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:72) Get the default compiler flags Defined make macro "C_VERSION" to "icc (ICC) 18.0.5 20180823" Defined make macro "MPICC_SHOW" to "icc -I/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker /ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Xlinker -rpath -Xlinker /ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Xlinker -rpath -Xlinker /opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -Xlinker -rpath -Xlinker /opt/intel/mpi-rt/2017.0.0/intel64/lib -lmpifort -lmpi -lmpigi -ldl -lrt -lpthread" Trying C compiler flag -O3 -mtune=native Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -O3 -mtune=native Defined make macro "Cxx_VERSION" to "icpc (ICC) 18.0.5 20180823" Defined make macro "MPICXX_SHOW" to "Unavailable" Trying Cxx compiler flag -O3 -mtune=native Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -O3 -mtune=native -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -O3 -mtune=native Defined make macro "FC_VERSION" to "ifort (IFORT) 18.0.5 20180823" Defined make macro "MPIFC_SHOW" to "Unavailable" Trying FC compiler flag -O3 -mtune=native Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -O3 -mtune=native child config.compilerFlags 0.722693 Running Executable WITHOUT threads to time it out Executing: mpiicc --help | head -n 20 stdout: Intel(R) C++ Compiler Help ========================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: icc [options] file1 [file2 ...] icpc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .c++ .i .ii), assembly (.s .S), object (.o), static library (.a), or other linkable file ================================================================================ TEST checkRestrict from config.compilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/compilers.py:150) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:150) Check for the C/CXX restrict keyword Running Executable WITHOUT threads to time it out Executing: mpiicc -V stdout: GNU ld version 2.27-34.base.el7_6.3 All intermediate test results are stored in /tmp/petsc-xt4fpc64/config.compilers Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.compilers/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" ================================================================================ TEST checkCFormatting from config.compilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/compilers.py:405) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:405) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCInline from config.compilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/compilers.py:120) TESTING: checkCInline from config.compilers(config/BuildSystem/config/compilers.py:120) Check for C inline keyword Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.compilers/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C Inline keyword to inline Defined "C_INLINE" to "inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/compilers.py:416) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:416) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.compilers/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY);dlopen(libname, RTLD_NOW);dlopen(libname, RTLD_LOCAL);dlopen(libname, RTLD_GLOBAL); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.compilers/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Defined "HAVE_RTLD_NOW" to "1" Defined "HAVE_RTLD_LOCAL" to "1" Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/compilers.py:214) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:214) Determines the libraries needed to link with C compiled code Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.compilers/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.compilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Running Executable WITHOUT threads to time it out Executing: mpiifort -o /tmp/petsc-xt4fpc64/config.compilers/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilers/conftest.o /tmp/petsc-xt4fpc64/config.compilers/confc.o -ldl C libraries are not needed when using Fortran linker Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.compilers/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/config.compilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -O3 -mtune=native -fPIC /tmp/petsc-xt4fpc64/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Running Executable WITHOUT threads to time it out Executing: mpiicpc -o /tmp/petsc-xt4fpc64/config.compilers/conftest -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilers/conftest.o /tmp/petsc-xt4fpc64/config.compilers/confc.o -ldl C libraries are not needed when using C++ linker ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/compilers.py:1363) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1363) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Defined make macro "C_DEPFLAGS" to "-MMD -MP" Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -fPIC -O3 -mtune=native -MMD -MP /tmp/petsc-xt4fpc64/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Trying Cxx compiler flag -MMD -MP Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.setCompilers -O3 -mtune=native -fPIC -MMD -MP /tmp/petsc-xt4fpc64/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ================================================================================ TEST checkC99Flag from config.compilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/compilers.py:1408) TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1408) Check for -std=c99 or equivalent flag Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Accepted C99 compile flag: Defined "HAVE_C99" to "1" Running Executable WITHOUT threads to time it out Executing: mpiicpc --help | head -n 20 stdout: Intel(R) C++ Compiler Help ========================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: icc [options] file1 [file2 ...] icpc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .c++ .i .ii), assembly (.s .S), object (.o), static library (.a), or other linkable file ================================================================================ TEST checkRestrict from config.compilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/compilers.py:150) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:150) Check for the C/CXX restrict keyword Running Executable WITHOUT threads to time it out Executing: mpiicc -V stdout: GNU ld version 2.27-34.base.el7_6.3 Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/config.compilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -O3 -mtune=native -fPIC /tmp/petsc-xt4fpc64/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/compilers.py:435) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:435) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -O3 -mtune=native -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } ================================================================================ TEST checkCxxInline from config.compilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/compilers.py:135) TESTING: checkCxxInline from config.compilers(config/BuildSystem/config/compilers.py:135) Check for C++ inline keyword Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/config.compilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -O3 -mtune=native -fPIC /tmp/petsc-xt4fpc64/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx Inline keyword to inline Defined "CXX_INLINE" to "inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/compilers.py:547) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:547) Determines the libraries needed to link with C++ from C and Fortran Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/config.compilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -O3 -mtune=native -fPIC /tmp/petsc-xt4fpc64/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.compilers/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.compilers/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilers/conftest.o /tmp/petsc-xt4fpc64/config.compilers/confc.o -ldl C++ libraries are not needed when using C linker Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/config.compilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -O3 -mtune=native -fPIC /tmp/petsc-xt4fpc64/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.compilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Running Executable WITHOUT threads to time it out Executing: mpiifort -o /tmp/petsc-xt4fpc64/config.compilers/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilers/conftest.o /tmp/petsc-xt4fpc64/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-xt4fpc64/config.compilers/confc.o: In function `asub()': conftest.cc:(.text+0x14): undefined reference to `__cxa_allocate_exception' conftest.cc:(.text+0x20): undefined reference to `typeinfo for int' conftest.cc:(.text+0x2b): undefined reference to `__cxa_throw' conftest.cc:(.text+0x43): undefined reference to `__cxa_begin_catch' conftest.cc:(.text+0x51): undefined reference to `std::cout' conftest.cc:(.text+0x56): undefined reference to `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)' conftest.cc:(.text+0x5b): undefined reference to `__cxa_end_catch' conftest.cc:(.text+0x6a): undefined reference to `operator delete(void*)' conftest.cc:(.text+0x90): undefined reference to `__cxa_end_catch' /tmp/petsc-xt4fpc64/config.compilers/confc.o: In function `__sti__$E': conftest.cc:(.text+0xa9): undefined reference to `std::ios_base::Init::Init()' conftest.cc:(.text+0xbe): undefined reference to `std::ios_base::Init::~Init()' /tmp/petsc-xt4fpc64/config.compilers/confc.o: In function `std::vector >::~vector()': conftest.cc:(.text._ZNSt6vectorIiSaIiEED1Ev[_ZNSt6vectorIiSaIiEED1Ev]+0x9): undefined reference to `operator delete(void*)' /tmp/petsc-xt4fpc64/config.compilers/confc.o: In function `std::_Vector_base >::~_Vector_base()': conftest.cc:(.text._ZNSt12_Vector_baseIiSaIiEED1Ev[_ZNSt12_Vector_baseIiSaIiEED1Ev]+0x9): undefined reference to `operator delete(void*)' /tmp/petsc-xt4fpc64/config.compilers/confc.o:(.data.DW.ref._ZTIi[DW.ref._ZTIi]+0x0): undefined reference to `typeinfo for int' /tmp/petsc-xt4fpc64/config.compilers/confc.o:(.gnu.linkonce.d.DW.ref.__gxx_personality_v0+0x0): undefined reference to `__gxx_personality_v0' Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/config.compilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -O3 -mtune=native -fPIC /tmp/petsc-xt4fpc64/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.compilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Running Executable WITHOUT threads to time it out Executing: mpiifort -o /tmp/petsc-xt4fpc64/config.compilers/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilers/conftest.o /tmp/petsc-xt4fpc64/config.compilers/confc.o -lstdc++ -ldl compilers: C++ requires -lstdc++ to link with FC compiler ================================================================================ TEST checkCxxDialect from config.compilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/compilers.py:463) TESTING: checkCxxDialect from config.compilers(config/BuildSystem/config/compilers.py:463) Determine the Cxx dialect supported by the compiler [and correspoding compiler option - if any]. -with-cxx-dialect can take options: auto: use highest dialect configure can determine cxx17: [future?] cxx14: gnu++14 or c++14 cxx11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default checkCxxDialect: checking CXX11 with flag: Defined "HAVE_CXX_DIALECT_CXX11" to "1" Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -O3 -mtune=native -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicpc -V stdout: GNU ld version 2.27-34.base.el7_6.3 ================================================================================ TEST checkFortranNameMangling from config.compilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/compilers.py:854) TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:854) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS Testing Fortran mangling type underscore with code void d1chk_(void){return;} Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.compilers/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.compilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Running Executable WITHOUT threads to time it out Executing: mpiifort -o /tmp/petsc-xt4fpc64/config.compilers/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilers/conftest.o /tmp/petsc-xt4fpc64/config.compilers/confc.o -lstdc++ -ldl compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" Running Executable WITHOUT threads to time it out Executing: mpiifort --version stdout: ifort (IFORT) 18.0.5 20180823 Copyright (C) 1985-2018 Intel Corporation. All rights reserved. Defined "FORTRAN_CHARLEN_T" to "int" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/compilers.py:892) TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:892) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.compilers/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.compilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilers/conftest.F90 Successful compile: Source: program main call d1_chk() end Running Executable WITHOUT threads to time it out Executing: mpiifort -o /tmp/petsc-xt4fpc64/config.compilers/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilers/conftest.o /tmp/petsc-xt4fpc64/config.compilers/confc.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-xt4fpc64/config.compilers/conftest.o: In function `MAIN__': conftest.F90:(.text+0x39): undefined reference to `d1_chk_' ================================================================================ TEST checkFortranLibraries from config.compilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/compilers.py:902) TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:902) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.compilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilers/conftest.F90 Successful compile: Source: program main #include call MPI_Allreduce() end Running Executable WITHOUT threads to time it out Executing: mpiifort -o /tmp/petsc-xt4fpc64/config.compilers/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilers/conftest.o -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.compilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilers/conftest.F90 Successful compile: Source: subroutine asub() print*,'testing' call MPI_Allreduce() return end Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.compilers/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern void asub_(void); int main(int argc,char **args) { asub_(); return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.compilers/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilers/conftest.o /tmp/petsc-xt4fpc64/config.compilers/confc.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-xt4fpc64/config.compilers/confc.o: In function `asub_': conftest.F90:(.text+0x41): undefined reference to `for_write_seq_lis' Fortran code cannot directly be linked with C linker, therefore will determine needed Fortran libraries Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.compilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: mpiifort -o /tmp/petsc-xt4fpc64/config.compilers/conftest -v -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilers/conftest.o -lstdc++ -ldl stdout: mpiifort for the Intel(R) MPI Library 2018 Update 4 for Linux* Copyright(C) 2003-2018, Intel Corporation. All rights reserved. Possible ERROR while running linker: stdout: mpiifort for the Intel(R) MPI Library 2018 Update 4 for Linux* Copyright(C) 2003-2018, Intel Corporation. All rights reserved.stderr: ifort version 18.0.5 /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/intel64/fortcom -mGLOB_em64t=TRUE -mP1OPT_version=18.0-intel64 -mGLOB_diag_file=/tmp/petsc-xt4fpc64/config.compilers/conftest.diag -mGLOB_long_size_64 -mGLOB_routine_pointer_size_64 -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 -mP2OPT_static_promotion -mP1OPT_print_version=FALSE -mCG_use_gas_got_workaround=F -mP2OPT_align_option_used=TRUE -mGLOB_gcc_version=650 "-mGLOB_options_string=-I/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include -I/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include -gcc-name=/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/bin/gcc -isystem/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/intel64 -isystem/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include -Xlinker -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -Xlinker -rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -Xlinker -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -Xlinker -rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -Xlinker -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -Xlinker -rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -Xlinker -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -Xlinker -rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -Xlinker -rpath=/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -o /tmp/petsc-xt4fpc64/config.compilers/conftest -v -fPIC -O3 -mtune=native -lstdc++ -ldl -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker /ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Xlinker -rpath -Xlinker /ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Xlinker -rpath -Xlinker /opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -Xlinker -rpath -Xlinker /opt/intel/mpi-rt/2017.0.0/intel64/lib -lmpifort -lmpi -lmpigi -ldl -lrt -lpthread" -mGLOB_position_independent_code -mGLOB_preemption_model=3 -mGLOB_cxx_limited_range=FALSE -mCG_extend_parms=FALSE -mGLOB_compiler_bin_directory=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/intel64 -mGLOB_as_output_backup_file_name=/tmp/ifortJEhFFcas_.s -mGLOB_dashboard_use_source_name -mGLOB_dashboard_per_object_dir=/tmp/petsc-xt4fpc64/config.compilers -mIPOPT_activate -mGLOB_uarch_tuning=0x13 -mGLOB_product_id_code=0x22006d90 -mP3OPT_use_mspp_call_convention -mP2OPT_subs_out_of_bound=FALSE -mP2OPT_disam_type_based_disam=2 -mGLOB_ansi_alias -mPGOPTI_value_profile_use=T -mGLOB_opt_report_use_source_name -mGLOB_opt_report_per_object_dir=/tmp/petsc-xt4fpc64/config.compilers -mP2OPT_il0_array_sections=TRUE -mGLOB_offload_mode=1 -mP2OPT_offload_unique_var_string=ifort0267274017ZlqSUY -mGLOB_opt_level=3 -mP2OPT_hlo_level=3 -mP2OPT_hlo -mP2OPT_hpo_rtt_control=0 -mIPOPT_args_in_regs=0 -mP2OPT_disam_assume_nonstd_intent_in=FALSE -mGLOB_imf_mapping_library=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/intel64/libiml_attr.so -mPGOPTI_gen_threadsafe_level=0 -mIPOPT_link -mIPOPT_ipo_activate -mIPOPT_mo_activate -mIPOPT_source_files_list=/tmp/ifortslismVFpHu -mIPOPT_mo_global_data -mIPOPT_link_script_file=/tmp/ifortscript7X8CGo "-mIPOPT_cmdline_link="/lib/../lib64/crt1.o" "/lib/../lib64/crti.o" "/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0/crtbegin.o" "--eh-frame-hdr" "--build-id" "-dynamic-linker" "/lib64/ld-linux-x86-64.so.2" "-m" "elf_x86_64" "-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt" "-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib" "-o" "/tmp/petsc-xt4fpc64/config.compilers/conftest" "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin/for_main.o" "-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin" "-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0/" "-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0/../../../../lib64" "-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0/../../../../lib64/" "-L/lib/../lib64" "-L/lib/../lib64/" "-L/usr/lib/../lib64" "-L/usr/lib/../lib64/" "-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0/../../../" "-L/lib64" "-L/lib/" "-L/usr/lib64" "-L/usr/lib" "-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64" "-rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64" "-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7" "-rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7" "-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64" "-rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64" "-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64" "-rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64" "-rpath=/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64" "/tmp/petsc-xt4fpc64/config.compilers/conftest.o" "-lstdc++" "-ldl" "--enable-new-dtags" "-rpath" "/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt" "-rpath" "/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib" "-rpath" "/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt" "-rpath" "/opt/intel/mpi-rt/2017.0.0/intel64/lib" "-lmpifort" "-lmpi" "-lmpigi" "-ldl" "-lrt" "-lpthread" "-Bdynamic" "-Bstatic" "-lifport" "-lifcoremt_pic" "-limf" "-lsvml" "-Bdynamic" "-lm" "-Bstatic" "-lipgo" "-lirc" "-Bdynamic" "-lpthread" "-Bstatic" "-lsvml" "-Bdynamic" "-lc" "-lgcc" "-lgcc_s" "-Bstatic" "-lirc_s" "-Bdynamic" "-ldl" "-lc" "/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0/crtend.o" "/lib/../lib64/crtn.o"" -mIPOPT_il_in_obj -mIPOPT_ipo_activate_warn=FALSE -mIPOPT_obj_output_file_name=/tmp/ipo_ifortSqPbM4.o -mIPOPT_whole_archive_fixup_file_name=/tmp/ifortwarch46vmGU -mGLOB_linker_version=2.27 -mGLOB_driver_tempfile_name=/tmp/iforttempfileNch7GO -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS -mGLOB_async_unwind_tables=TRUE -mGLOB_obj_output_file=/tmp/ipo_ifortSqPbM4.o -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE -mP1OPT_source_file_name=ipo_out.f -mP2OPT_symtab_type_copy=true /tmp/petsc-xt4fpc64/config.compilers/conftest.o -mIPOPT_object_files=T -mIPOPT_assembly_files=/tmp/ifortalisMMiAKS -mIPOPT_generated_tempfiles=/tmp/ifortelisnMWMJM -mIPOPT_embedded_object_base_name=/tmp/iforteobj46EZIG -mIPOPT_cmdline_link_new_name=/tmp/ifortllis7iycIA ld /lib/../lib64/crt1.o /lib/../lib64/crti.o /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0/crtbegin.o --eh-frame-hdr --build-id -dynamic-linker /lib64/ld-linux-x86-64.so.2 -m elf_x86_64 -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -o /tmp/petsc-xt4fpc64/config.compilers/conftest /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin/for_main.o -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0/ -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0/../../../../lib64 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -rpath=/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 /tmp/petsc-xt4fpc64/config.compilers/conftest.o -lstdc++ -ldl --enable-new-dtags -rpath /ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -rpath /ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -rpath /opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -rpath /opt/intel/mpi-rt/2017.0.0/intel64/lib -lmpifort -lmpi -lmpigi -ldl -lrt -lpthread -Bdynamic -Bstatic -lifport -lifcoremt_pic -limf -lsvml -Bdynamic -lm -Bstatic -lipgo -lirc -Bdynamic -lpthread -Bstatic -lsvml -Bdynamic -lc -lgcc -lgcc_s -Bstatic -lirc_s -Bdynamic -ldl -lc /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0/crtend.o /lib/../lib64/crtn.o compilers: Checking arg mpiifort compilers: Unknown arg mpiifort compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg the compilers: Unknown arg the compilers: Checking arg Intel(R) compilers: Unknown arg Intel(R) compilers: Checking arg MPI compilers: Unknown arg MPI compilers: Checking arg Library compilers: Unknown arg Library compilers: Checking arg 2018 compilers: Unknown arg 2018 compilers: Checking arg Update compilers: Unknown arg Update compilers: Checking arg 4 compilers: Unknown arg 4 compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg Linux* compilers: Unknown arg Linux* compilers: Checking arg Copyright(C) compilers: Unknown arg Copyright(C) compilers: Checking arg 2003-2018, compilers: Unknown arg 2003-2018, compilers: Checking arg Intel compilers: Unknown arg Intel compilers: Checking arg Corporation. compilers: Unknown arg Corporation. compilers: Checking arg All compilers: Unknown arg All compilers: Checking arg rights compilers: Unknown arg rights compilers: Checking arg reserved. compilers: Unknown arg reserved. compilers: Checking arg ifort compilers: Unknown arg ifort compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 18.0.5 compilers: Unknown arg 18.0.5 compilers: Checking arg /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/intel64/fortcom compilers: Unknown arg /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/intel64/fortcom compilers: Checking arg -mGLOB_em64t=TRUE compilers: Unknown arg -mGLOB_em64t=TRUE compilers: Checking arg -mP1OPT_version=18.0-intel64 compilers: Unknown arg -mP1OPT_version=18.0-intel64 compilers: Checking arg -mGLOB_diag_file=/tmp/petsc-xt4fpc64/config.compilers/conftest.diag compilers: Unknown arg -mGLOB_diag_file=/tmp/petsc-xt4fpc64/config.compilers/conftest.diag compilers: Checking arg -mGLOB_long_size_64 compilers: Unknown arg -mGLOB_long_size_64 compilers: Checking arg -mGLOB_routine_pointer_size_64 compilers: Unknown arg -mGLOB_routine_pointer_size_64 compilers: Checking arg -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 compilers: Unknown arg -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 compilers: Checking arg -mP2OPT_static_promotion compilers: Unknown arg -mP2OPT_static_promotion compilers: Checking arg -mP1OPT_print_version=FALSE compilers: Unknown arg -mP1OPT_print_version=FALSE compilers: Checking arg -mCG_use_gas_got_workaround=F compilers: Unknown arg -mCG_use_gas_got_workaround=F compilers: Checking arg -mP2OPT_align_option_used=TRUE compilers: Unknown arg -mP2OPT_align_option_used=TRUE compilers: Checking arg -mGLOB_gcc_version=650 compilers: Unknown arg -mGLOB_gcc_version=650 compilers: Checking arg "-mGLOB_options_string=-I/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include compilers: Unknown arg "-mGLOB_options_string=-I/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include compilers: Checking arg -I/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include compilers: Found include directory: /ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include compilers: Checking arg -gcc-name=/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/bin/gcc compilers: Unknown arg -gcc-name=/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/bin/gcc compilers: Checking arg -isystem/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/intel64 compilers: Unknown arg -isystem/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/intel64 compilers: Checking arg -isystem/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include compilers: Unknown arg -isystem/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include compilers: Checking arg -Xlinker compilers: Unknown arg -Xlinker compilers: Checking arg -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 compilers: Found library directory: -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 compilers: Checking arg -Xlinker compilers: Unknown arg -Xlinker compilers: Checking arg -rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 compilers: Unknown arg -rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 compilers: Checking arg -Xlinker compilers: Unknown arg -Xlinker compilers: Checking arg -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 compilers: Found library directory: -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 compilers: Checking arg -Xlinker compilers: Unknown arg -Xlinker compilers: Checking arg -rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 compilers: Unknown arg -rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 compilers: Checking arg -Xlinker compilers: Unknown arg -Xlinker compilers: Checking arg -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 compilers: Found library directory: -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 compilers: Checking arg -Xlinker compilers: Unknown arg -Xlinker compilers: Checking arg -rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 compilers: Unknown arg -rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 compilers: Checking arg -Xlinker compilers: Unknown arg -Xlinker compilers: Checking arg -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 compilers: Found library directory: -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 compilers: Checking arg -Xlinker compilers: Unknown arg -Xlinker compilers: Checking arg -rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 compilers: Unknown arg -rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 compilers: Checking arg -Xlinker compilers: Unknown arg -Xlinker compilers: Checking arg -rpath=/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 compilers: Unknown arg -rpath=/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-xt4fpc64/config.compilers/conftest compilers: Unknown arg /tmp/petsc-xt4fpc64/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -fPIC compilers: Unknown arg -fPIC compilers: Checking arg -O3 compilers: Unknown arg -O3 compilers: Checking arg -mtune=native compilers: Unknown arg -mtune=native compilers: Checking arg -lstdc++ compilers: Found library: -lstdc++ compilers: Checking arg -ldl compilers: Found library: -ldl compilers: Checking arg -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt compilers: Found library directory: -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt compilers: Checking arg -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib compilers: Found library directory: -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib compilers: Checking arg -Xlinker compilers: Unknown arg -Xlinker compilers: Checking arg --enable-new-dtags compilers: Unknown arg --enable-new-dtags compilers: Checking arg -Xlinker compilers: Unknown arg -Xlinker compilers: Checking arg -rpath compilers: Checking arg /ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt compilers: Unknown arg /ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt compilers: Checking arg -Xlinker compilers: Unknown arg -Xlinker compilers: Checking arg -rpath compilers: Checking arg /ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib compilers: Unknown arg /ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib compilers: Checking arg -Xlinker compilers: Unknown arg -Xlinker compilers: Checking arg -rpath compilers: Checking arg /opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt compilers: Unknown arg /opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt compilers: Checking arg -Xlinker compilers: Unknown arg -Xlinker compilers: Checking arg -rpath compilers: Checking arg /opt/intel/mpi-rt/2017.0.0/intel64/lib compilers: Unknown arg /opt/intel/mpi-rt/2017.0.0/intel64/lib compilers: Checking arg -lmpifort compilers: Found library: -lmpifort compilers: Checking arg -lmpi compilers: Found library: -lmpi compilers: Checking arg -lmpigi compilers: Found library: -lmpigi compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lrt compilers: Found library: -lrt compilers: Checking arg -lpthread" compilers: Found library: -lpthread compilers: Checking arg -mGLOB_position_independent_code compilers: Unknown arg -mGLOB_position_independent_code compilers: Checking arg -mGLOB_preemption_model=3 compilers: Unknown arg -mGLOB_preemption_model=3 compilers: Checking arg -mGLOB_cxx_limited_range=FALSE compilers: Unknown arg -mGLOB_cxx_limited_range=FALSE compilers: Checking arg -mCG_extend_parms=FALSE compilers: Unknown arg -mCG_extend_parms=FALSE compilers: Checking arg -mGLOB_compiler_bin_directory=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/intel64 compilers: Unknown arg -mGLOB_compiler_bin_directory=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/intel64 compilers: Checking arg -mGLOB_as_output_backup_file_name=/tmp/ifortJEhFFcas_.s compilers: Unknown arg -mGLOB_as_output_backup_file_name=/tmp/ifortJEhFFcas_.s compilers: Checking arg -mGLOB_dashboard_use_source_name compilers: Unknown arg -mGLOB_dashboard_use_source_name compilers: Checking arg -mGLOB_dashboard_per_object_dir=/tmp/petsc-xt4fpc64/config.compilers compilers: Unknown arg -mGLOB_dashboard_per_object_dir=/tmp/petsc-xt4fpc64/config.compilers compilers: Checking arg -mIPOPT_activate compilers: Unknown arg -mIPOPT_activate compilers: Checking arg -mGLOB_uarch_tuning=0x13 compilers: Unknown arg -mGLOB_uarch_tuning=0x13 compilers: Checking arg -mGLOB_product_id_code=0x22006d90 compilers: Unknown arg -mGLOB_product_id_code=0x22006d90 compilers: Checking arg -mP3OPT_use_mspp_call_convention compilers: Unknown arg -mP3OPT_use_mspp_call_convention compilers: Checking arg -mP2OPT_subs_out_of_bound=FALSE compilers: Unknown arg -mP2OPT_subs_out_of_bound=FALSE compilers: Checking arg -mP2OPT_disam_type_based_disam=2 compilers: Unknown arg -mP2OPT_disam_type_based_disam=2 compilers: Checking arg -mGLOB_ansi_alias compilers: Unknown arg -mGLOB_ansi_alias compilers: Checking arg -mPGOPTI_value_profile_use=T compilers: Unknown arg -mPGOPTI_value_profile_use=T compilers: Checking arg -mGLOB_opt_report_use_source_name compilers: Unknown arg -mGLOB_opt_report_use_source_name compilers: Checking arg -mGLOB_opt_report_per_object_dir=/tmp/petsc-xt4fpc64/config.compilers compilers: Unknown arg -mGLOB_opt_report_per_object_dir=/tmp/petsc-xt4fpc64/config.compilers compilers: Checking arg -mP2OPT_il0_array_sections=TRUE compilers: Unknown arg -mP2OPT_il0_array_sections=TRUE compilers: Checking arg -mGLOB_offload_mode=1 compilers: Unknown arg -mGLOB_offload_mode=1 compilers: Checking arg -mP2OPT_offload_unique_var_string=ifort0267274017ZlqSUY compilers: Unknown arg -mP2OPT_offload_unique_var_string=ifort0267274017ZlqSUY compilers: Checking arg -mGLOB_opt_level=3 compilers: Unknown arg -mGLOB_opt_level=3 compilers: Checking arg -mP2OPT_hlo_level=3 compilers: Unknown arg -mP2OPT_hlo_level=3 compilers: Checking arg -mP2OPT_hlo compilers: Unknown arg -mP2OPT_hlo compilers: Checking arg -mP2OPT_hpo_rtt_control=0 compilers: Unknown arg -mP2OPT_hpo_rtt_control=0 compilers: Checking arg -mIPOPT_args_in_regs=0 compilers: Unknown arg -mIPOPT_args_in_regs=0 compilers: Checking arg -mP2OPT_disam_assume_nonstd_intent_in=FALSE compilers: Unknown arg -mP2OPT_disam_assume_nonstd_intent_in=FALSE compilers: Checking arg -mGLOB_imf_mapping_library=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/intel64/libiml_attr.so compilers: Unknown arg -mGLOB_imf_mapping_library=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/intel64/libiml_attr.so compilers: Checking arg -mPGOPTI_gen_threadsafe_level=0 compilers: Unknown arg -mPGOPTI_gen_threadsafe_level=0 compilers: Checking arg -mIPOPT_link compilers: Unknown arg -mIPOPT_link compilers: Checking arg -mIPOPT_ipo_activate compilers: Unknown arg -mIPOPT_ipo_activate compilers: Checking arg -mIPOPT_mo_activate compilers: Unknown arg -mIPOPT_mo_activate compilers: Checking arg -mIPOPT_source_files_list=/tmp/ifortslismVFpHu compilers: Unknown arg -mIPOPT_source_files_list=/tmp/ifortslismVFpHu compilers: Checking arg -mIPOPT_mo_global_data compilers: Unknown arg -mIPOPT_mo_global_data compilers: Checking arg -mIPOPT_link_script_file=/tmp/ifortscript7X8CGo compilers: Unknown arg -mIPOPT_link_script_file=/tmp/ifortscript7X8CGo compilers: Checking arg "-mIPOPT_cmdline_link="/lib/../lib64/crt1.o" compilers: Unknown arg -mIPOPT_cmdline_link="/lib/../lib64/crt1.o compilers: Checking arg "/lib/../lib64/crti.o" compilers: Unknown arg /lib/../lib64/crti.o compilers: Checking arg "/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0/crtbegin.o" compilers: Unknown arg /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0/crtbegin.o compilers: Checking arg "--eh-frame-hdr" compilers: Unknown arg --eh-frame-hdr compilers: Checking arg "--build-id" compilers: Unknown arg --build-id compilers: Checking arg "-dynamic-linker" compilers: Unknown arg -dynamic-linker compilers: Checking arg "/lib64/ld-linux-x86-64.so.2" compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg "-m" compilers: Unknown arg -m compilers: Checking arg "elf_x86_64" compilers: Unknown arg elf_x86_64 compilers: Checking arg "-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt" compilers: Already in lflags so skipping: -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt compilers: Checking arg "-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib" compilers: Already in lflags so skipping: -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib compilers: Checking arg "-o" compilers: Unknown arg -o compilers: Checking arg "/tmp/petsc-xt4fpc64/config.compilers/conftest" compilers: Unknown arg /tmp/petsc-xt4fpc64/config.compilers/conftest compilers: Checking arg "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin/for_main.o" compilers: Unknown arg /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin/for_main.o compilers: Checking arg "-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin" compilers: Found library directory: -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin compilers: Checking arg "-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0/" compilers: Found library directory: -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 compilers: Checking arg "-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0/../../../../lib64" compilers: Found library directory: -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 compilers: Checking arg "-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0/../../../../lib64/" compilers: Already in lflags so skipping: -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 compilers: Checking arg "-L/lib/../lib64" compilers: Checking arg "-L/lib/../lib64/" compilers: Checking arg "-L/usr/lib/../lib64" compilers: Checking arg "-L/usr/lib/../lib64/" compilers: Checking arg "-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0/../../../" compilers: Found library directory: -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib compilers: Checking arg "-L/lib64" compilers: Checking arg "-L/lib/" compilers: Checking arg "-L/usr/lib64" compilers: Checking arg "-L/usr/lib" compilers: Checking arg "-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64" compilers: Already in lflags so skipping: -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 compilers: Checking arg "-rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64" compilers: Unknown arg -rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 compilers: Checking arg "-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7" compilers: Already in lflags so skipping: -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 compilers: Checking arg "-rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7" compilers: Unknown arg -rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 compilers: Checking arg "-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64" compilers: Already in lflags so skipping: -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 compilers: Checking arg "-rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64" compilers: Unknown arg -rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 compilers: Checking arg "-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64" compilers: Already in lflags so skipping: -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 compilers: Checking arg "-rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64" compilers: Unknown arg -rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 compilers: Checking arg "-rpath=/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64" compilers: Unknown arg -rpath=/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 compilers: Checking arg "/tmp/petsc-xt4fpc64/config.compilers/conftest.o" compilers: Unknown arg /tmp/petsc-xt4fpc64/config.compilers/conftest.o compilers: Checking arg "-lstdc++" compilers: Already in lflags: -lstdc++ compilers: Checking arg "-ldl" compilers: Already in lflags: -ldl compilers: Checking arg "--enable-new-dtags" compilers: Unknown arg --enable-new-dtags compilers: Checking arg "-rpath" compilers: Found -rpath library: /ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt compilers: Checking arg "-rpath" compilers: Found -rpath library: /ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib compilers: Checking arg "-rpath" compilers: Found -rpath library: /opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt compilers: Checking arg "-rpath" compilers: Found -rpath library: /opt/intel/mpi-rt/2017.0.0/intel64/lib compilers: Checking arg "-lmpifort" compilers: Already in lflags: -lmpifort compilers: Checking arg "-lmpi" compilers: Already in lflags: -lmpi compilers: Checking arg "-lmpigi" compilers: Already in lflags: -lmpigi compilers: Checking arg "-ldl" compilers: Already in lflags: -ldl compilers: Checking arg "-lrt" compilers: Already in lflags: -lrt compilers: Checking arg "-lpthread" compilers: Already in lflags: -lpthread compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-lifport" compilers: Found library: -lifport compilers: Checking arg "-lifcoremt_pic" compilers: Found library: -lifcoremt_pic compilers: Checking arg "-limf" compilers: Found library: -limf compilers: Checking arg "-lsvml" compilers: Found library: -lsvml compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-lm" compilers: Found library: -lm compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-lipgo" compilers: Found library: -lipgo compilers: Checking arg "-lirc" compilers: Found library: -lirc compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-lpthread" compilers: Already in lflags: -lpthread compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-lsvml" compilers: Already in lflags: -lsvml compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-lc" compilers: Found system library therefore skipping: -lc compilers: Checking arg "-lgcc" compilers: Found system library therefore skipping: -lgcc compilers: Checking arg "-lgcc_s" compilers: Found library: -lgcc_s compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-lirc_s" compilers: Found library: -lirc_s compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-ldl" compilers: Already in lflags: -ldl compilers: Checking arg "-lc" compilers: Found system library therefore skipping: -lc compilers: Checking arg "/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0/crtend.o" compilers: Unknown arg /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0/crtend.o compilers: Checking arg "/lib/../lib64/crtn.o"" compilers: Unknown arg /lib/../lib64/crtn.o compilers: Checking arg -mIPOPT_il_in_obj compilers: Unknown arg -mIPOPT_il_in_obj compilers: Checking arg -mIPOPT_ipo_activate_warn=FALSE compilers: Unknown arg -mIPOPT_ipo_activate_warn=FALSE compilers: Checking arg -mIPOPT_obj_output_file_name=/tmp/ipo_ifortSqPbM4.o compilers: Unknown arg -mIPOPT_obj_output_file_name=/tmp/ipo_ifortSqPbM4.o compilers: Checking arg -mIPOPT_whole_archive_fixup_file_name=/tmp/ifortwarch46vmGU compilers: Unknown arg -mIPOPT_whole_archive_fixup_file_name=/tmp/ifortwarch46vmGU compilers: Checking arg -mGLOB_linker_version=2.27 compilers: Unknown arg -mGLOB_linker_version=2.27 compilers: Checking arg -mGLOB_driver_tempfile_name=/tmp/iforttempfileNch7GO compilers: Unknown arg -mGLOB_driver_tempfile_name=/tmp/iforttempfileNch7GO compilers: Checking arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS compilers: Unknown arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS compilers: Checking arg -mGLOB_async_unwind_tables=TRUE compilers: Unknown arg -mGLOB_async_unwind_tables=TRUE compilers: Checking arg -mGLOB_obj_output_file=/tmp/ipo_ifortSqPbM4.o compilers: Unknown arg -mGLOB_obj_output_file=/tmp/ipo_ifortSqPbM4.o compilers: Checking arg -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE compilers: Unknown arg -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE compilers: Checking arg -mP1OPT_source_file_name=ipo_out.f compilers: Unknown arg -mP1OPT_source_file_name=ipo_out.f compilers: Checking arg -mP2OPT_symtab_type_copy=true compilers: Unknown arg -mP2OPT_symtab_type_copy=true compilers: Checking arg /tmp/petsc-xt4fpc64/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-xt4fpc64/config.compilers/conftest.o compilers: Checking arg -mIPOPT_object_files=T compilers: Unknown arg -mIPOPT_object_files=T compilers: Checking arg -mIPOPT_assembly_files=/tmp/ifortalisMMiAKS compilers: Unknown arg -mIPOPT_assembly_files=/tmp/ifortalisMMiAKS compilers: Checking arg -mIPOPT_generated_tempfiles=/tmp/ifortelisnMWMJM compilers: Unknown arg -mIPOPT_generated_tempfiles=/tmp/ifortelisnMWMJM compilers: Checking arg -mIPOPT_embedded_object_base_name=/tmp/iforteobj46EZIG compilers: Unknown arg -mIPOPT_embedded_object_base_name=/tmp/iforteobj46EZIG compilers: Checking arg -mIPOPT_cmdline_link_new_name=/tmp/ifortllis7iycIA compilers: Unknown arg -mIPOPT_cmdline_link_new_name=/tmp/ifortllis7iycIA compilers: Checking arg ld compilers: Unknown arg ld compilers: Checking arg /lib/../lib64/crt1.o compilers: Unknown arg /lib/../lib64/crt1.o compilers: Checking arg /lib/../lib64/crti.o compilers: Unknown arg /lib/../lib64/crti.o compilers: Checking arg /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0/crtbegin.o compilers: Unknown arg /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0/crtbegin.o compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt compilers: Already in lflags so skipping: -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt compilers: Checking arg -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib compilers: Already in lflags so skipping: -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-xt4fpc64/config.compilers/conftest compilers: Unknown arg /tmp/petsc-xt4fpc64/config.compilers/conftest compilers: Checking arg /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin/for_main.o compilers: Unknown arg /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin/for_main.o compilers: Checking arg -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin compilers: Already in lflags so skipping: -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin compilers: Checking arg -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0/ compilers: Already in lflags so skipping: -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 compilers: Checking arg -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0/../../../../lib64 compilers: Already in lflags so skipping: -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 compilers: Checking arg -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0/../../../../lib64/ compilers: Already in lflags so skipping: -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 compilers: Checking arg -L/lib/../lib64 compilers: Checking arg -L/lib/../lib64/ compilers: Checking arg -L/usr/lib/../lib64 compilers: Checking arg -L/usr/lib/../lib64/ compilers: Checking arg -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0/../../../ compilers: Already in lflags so skipping: -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib compilers: Checking arg -L/lib64 compilers: Checking arg -L/lib/ compilers: Checking arg -L/usr/lib64 compilers: Checking arg -L/usr/lib compilers: Checking arg -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 compilers: Already in lflags so skipping: -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 compilers: Checking arg -rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 compilers: Unknown arg -rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 compilers: Checking arg -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 compilers: Already in lflags so skipping: -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 compilers: Checking arg -rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 compilers: Unknown arg -rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 compilers: Checking arg -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 compilers: Already in lflags so skipping: -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 compilers: Checking arg -rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 compilers: Unknown arg -rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 compilers: Checking arg -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 compilers: Checking arg -rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 compilers: Unknown arg -rpath=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 compilers: Checking arg -rpath=/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 compilers: Unknown arg -rpath=/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 compilers: Checking arg /tmp/petsc-xt4fpc64/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-xt4fpc64/config.compilers/conftest.o compilers: Checking arg -lstdc++ compilers: Already in lflags: -lstdc++ compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg --enable-new-dtags compilers: Unknown arg --enable-new-dtags compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -lmpifort compilers: Already in lflags: -lmpifort compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lmpigi compilers: Already in lflags: -lmpigi compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lrt compilers: Already in lflags: -lrt compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lifport compilers: Already in lflags: -lifport compilers: Checking arg -lifcoremt_pic compilers: Already in lflags: -lifcoremt_pic compilers: Checking arg -limf compilers: Already in lflags: -limf compilers: Checking arg -lsvml compilers: Already in lflags: -lsvml compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -lm compilers: Already in lflags: -lm compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lipgo compilers: Already in lflags: -lipgo compilers: Checking arg -lirc compilers: Already in lflags: -lirc compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lsvml compilers: Already in lflags: -lsvml compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -lc compilers: Found system library therefore skipping: -lc compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lirc_s compilers: Already in lflags: -lirc_s compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lc compilers: Found system library therefore skipping: -lc compilers: Checking arg /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0/crtend.o compilers: Unknown arg /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0/crtend.o compilers: Checking arg /lib/../lib64/crtn.o compilers: Unknown arg /lib/../lib64/crtn.o compilers: Libraries needed to link Fortran code with the C linker: ['-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64', '-lstdc++', '-ldl', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-lmpifort', '-lmpi', '-lmpigi', '-lrt', '-lpthread', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt', '-Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib', '-lifport', '-lifcoremt_pic', '-limf', '-lsvml', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used with C as the linker Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -lstdc++ -ldl -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -lmpifort -lmpi -lmpigi -lrt -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lgcc_s -lirc_s -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -lstdc++ -ldl -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -lmpifort -lmpi -lmpigi -lrt -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lgcc_s -lirc_s -lstdc++ -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -lstdc++ -ldl -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -lmpifort -lmpi -lmpigi -lrt -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lgcc_s -lirc_s -lstdc++ -ldl Testing executable /tmp/petsc-xt4fpc64/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-xt4fpc64/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-xt4fpc64/config.setCompilers/conftest compilers: Check that Fortran libraries can be used with C++ as linker compilers: Fortran libraries can be used from C++ Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -O3 -mtune=native -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -O3 -mtune=native -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicpc -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest -O3 -mtune=native /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -lstdc++ -ldl -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -lmpifort -lmpi -lmpigi -lrt -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lgcc_s -lirc_s -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -O3 -mtune=native -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicpc -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest -O3 -mtune=native /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -lstdc++ -ldl -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -lmpifort -lmpi -lmpigi -lrt -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lgcc_s -lirc_s -lstdc++ -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -O3 -mtune=native -fPIC /tmp/petsc-xt4fpc64/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicpc -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest -O3 -mtune=native /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -lstdc++ -ldl -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -lmpifort -lmpi -lmpigi -lrt -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lgcc_s -lirc_s -lstdc++ -ldl Testing executable /tmp/petsc-xt4fpc64/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-xt4fpc64/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-xt4fpc64/config.setCompilers/conftest ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/compilers.py:1328) TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1328) Check that Fortran can link C++ libraries Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/config.compilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -O3 -mtune=native -fPIC /tmp/petsc-xt4fpc64/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/config.compilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -O3 -mtune=native -fPIC /tmp/petsc-xt4fpc64/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.compilers/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Running Executable WITHOUT threads to time it out Executing: mpiifort -o /tmp/petsc-xt4fpc64/config.compilers/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilers/conftest.o /tmp/petsc-xt4fpc64/config.compilers/cxxobj.o /tmp/petsc-xt4fpc64/config.compilers/confc.o -lstdc++ -ldl compilers: Fortran can link C++ functions ================================================================================ TEST setupFrameworkCompilers from config.compilers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/compilers.py:1473) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1473) child config.compilers 10.391502 ================================================================================ TEST configureClosure from config.utilities.closure(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/utilities/closure.py:17) TESTING: configureClosure from config.utilities.closure(config/BuildSystem/config/utilities/closure.py:17) Determine if Apple ^close syntax is supported in C All intermediate test results are stored in /tmp/petsc-xt4fpc64/config.utilities.closure Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.utilities.closure/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.closure/conftest.c Possible ERROR while running compiler: exit code 2 stderr: /tmp/petsc-xt4fpc64/config.utilities.closure/conftest.c(6): error: expected an identifier int (^closure)(int);; ^ compilation aborted for /tmp/petsc-xt4fpc64/config.utilities.closure/conftest.c (code 2) Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Compile failed inside link child config.utilities.closure 0.079708 ================================================================================ TEST checkFortranTypeSizes from config.compilersFortran(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/compilersFortran.py:56) TESTING: checkFortranTypeSizes from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:56) Check whether real*8 is supported and suggest flags which will allow support All intermediate test results are stored in /tmp/petsc-xt4fpc64/config.compilersFortran Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.compilersFortran/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.compilersFortran -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilersFortran/conftest.F90 Successful compile: Source: program main real*8 variable end ================================================================================ TEST checkFortranPreprocessor from config.compilersFortran(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/compilersFortran.py:73) TESTING: checkFortranPreprocessor from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:73) Determine if Fortran handles preprocessing properly Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.setCompilers -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.setCompilers/conftest.F90 Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end compilers: Fortran uses preprocessor ================================================================================ TEST checkFortranDefineCompilerOption from config.compilersFortran(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/compilersFortran.py:96) TESTING: checkFortranDefineCompilerOption from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:96) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.setCompilers -fPIC -O3 -mtune=native -DTesting /tmp/petsc-xt4fpc64/config.setCompilers/conftest.F90 Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Defined make macro "FC_DEFINE_FLAG" to "-D" compilers: Fortran uses -D for defining macro ================================================================================ TEST checkFortran90 from config.compilersFortran(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/compilersFortran.py:146) TESTING: checkFortran90 from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:146) Determine whether the Fortran compiler handles F90 Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.compilersFortran/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilersFortran -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilersFortran/conftest.F90 Successful compile: Source: program main REAL(KIND=SELECTED_REAL_KIND(10)) d INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Running Executable WITHOUT threads to time it out Executing: mpiifort -o /tmp/petsc-xt4fpc64/config.compilersFortran/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilersFortran/conftest.o -lstdc++ -ldl Fortran compiler supports F90 ================================================================================ TEST checkFortran90FreeForm from config.compilersFortran(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/compilersFortran.py:162) TESTING: checkFortran90FreeForm from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:162) Determine whether the Fortran compiler handles F90FreeForm We also require that the compiler handles lines longer than 132 characters Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.compilersFortran/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilersFortran -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilersFortran/conftest.F90 Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8); INTEGER (KIND=int) :: ierr; ierr = 1 end Running Executable WITHOUT threads to time it out Executing: mpiifort -o /tmp/petsc-xt4fpc64/config.compilersFortran/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilersFortran/conftest.o -lstdc++ -ldl Defined "USING_F90FREEFORM" to "1" Fortran compiler supports F90FreeForm ================================================================================ TEST checkFortran2003 from config.compilersFortran(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/compilersFortran.py:176) TESTING: checkFortran2003 from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:176) Determine whether the Fortran compiler handles F2003 Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.compilersFortran/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilersFortran -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilersFortran/conftest.F90 Successful compile: Source: module Base_module type, public :: base_type integer :: A contains procedure, public :: Print => BasePrint end type base_type contains subroutine BasePrint(this) class(base_type) :: this end subroutine BasePrint end module Base_module program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Running Executable WITHOUT threads to time it out Executing: mpiifort -o /tmp/petsc-xt4fpc64/config.compilersFortran/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilersFortran/conftest.o -lstdc++ -ldl Defined "USING_F2003" to "1" Fortran compiler supports F2003 ================================================================================ TEST checkFortran90Array from config.compilersFortran(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/compilersFortran.py:211) TESTING: checkFortran90Array from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:211) Check for F90 array interfaces Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.compilersFortran/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilersFortran/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void f90arraytest_(void* a1, void* a2,void* a3, void* i) { printf("arrays [%p %p %p]\n",a1,a2,a3); fflush(stdout); return; } void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void* p2, void* p3) { printf("arrays [%p %p %p]\n",a1,a2,a3); if ((p1 == p3) && (p1 != p2)) { printf("pointers match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); } else { printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); exit(111); } return; } Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.compilersFortran/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilersFortran -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilersFortran/conftest.F90 Successful compile: Source: program main Interface Subroutine f90ptrtest(p1,p2,p3,i) integer, pointer :: p1(:,:) integer, pointer :: p2(:,:) integer, pointer :: p3(:,:) integer i End Subroutine End Interface integer, pointer :: ptr1(:,:),ptr2(:,:) integer, target :: array(6:8,9:21) integer in in = 25 ptr1 => array ptr2 => array call f90arraytest(ptr1,ptr2,ptr1,in) call f90ptrtest(ptr1,ptr2,ptr1,in) end Running Executable WITHOUT threads to time it out Executing: mpiifort -o /tmp/petsc-xt4fpc64/config.compilersFortran/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilersFortran/conftest.o /tmp/petsc-xt4fpc64/config.compilersFortran/fooobj.o -lstdc++ -ldl Testing executable /tmp/petsc-xt4fpc64/config.compilersFortran/conftest to see if it can be run Executing: /tmp/petsc-xt4fpc64/config.compilersFortran/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-xt4fpc64/config.compilersFortran/conftest stdout: arrays [0x69c0c0 0x69c0c0 0x69c0c0] arrays [0x69c160 0x69c1c0 0x69c160] pointers do not match! [0x2ab98c6ac2c0 0x9fc0] [0x2ab98e5c620d] ERROR while running executable: Could not execute "['/tmp/petsc-xt4fpc64/config.compilersFortran/conftest']": arrays [0x69c0c0 0x69c0c0 0x69c0c0] arrays [0x69c160 0x69c1c0 0x69c160] pointers do not match! [0x2ab98c6ac2c0 0x9fc0] [0x2ab98e5c620d] compilers: F90 uses a single argument for array pointers ================================================================================ TEST checkFortran90AssumedType from config.compilersFortran(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/compilersFortran.py:298) TESTING: checkFortran90AssumedType from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:298) Running Executable WITHOUT threads to time it out Executing: mpiifort -qversion ================================================================================ TEST checkFortranModuleInclude from config.compilersFortran(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/compilersFortran.py:303) TESTING: checkFortranModuleInclude from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:303) Figures out what flag is used to specify the include path for Fortran modules Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.compilersFortran/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilersFortran -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilersFortran/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.compilersFortran/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.compilersFortran/confdir -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilersFortran/conftest.F90 Successful compile: Source: program main use configtest write(*,*) testint end Running Executable WITHOUT threads to time it out Executing: mpiifort -o /tmp/petsc-xt4fpc64/config.compilersFortran/conftest -I/tmp/petsc-xt4fpc64/config.compilersFortran/confdir -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilersFortran/conftest.o /tmp/petsc-xt4fpc64/config.compilersFortran/configtest.o -lstdc++ -ldl compilers: Fortran module include flag -I found ================================================================================ TEST checkFortranModuleOutput from config.compilersFortran(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/compilersFortran.py:369) TESTING: checkFortranModuleOutput from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:369) Figures out what flag is used to specify the include path for Fortran modules Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.compilersFortran/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilersFortran -module /tmp/petsc-xt4fpc64/config.compilersFortran/confdir -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilersFortran/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module found ================================================================================ TEST checkFortranTypeStar from config.compilersFortran(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/compilersFortran.py:135) TESTING: checkFortranTypeStar from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:135) Determine whether the Fortran compiler handles type(*) Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.compilersFortran/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilersFortran -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilersFortran/conftest.F90 Successful compile: Source: program main interface subroutine a(b) type(*) :: b(:) end subroutine end interface end Defined "HAVE_FORTRAN_TYPE_STAR" to "1" Fortran compiler supports type(*) ================================================================================ TEST checkFortranTypeInitialize from config.compilersFortran(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/compilersFortran.py:125) TESTING: checkFortranTypeInitialize from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:125) Determines if PETSc objects in Fortran are initialized by default (doesn't work with common blocks) Defined "FORTRAN_TYPE_INITIALIZE" to " = -2" Initializing Fortran objects ================================================================================ TEST configureFortranFlush from config.compilersFortran(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/compilersFortran.py:116) TESTING: configureFortranFlush from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:116) Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.compilersFortran/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilersFortran -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilersFortran/conftest.F90 Successful compile: Source: program main call flush(6) end Running Executable WITHOUT threads to time it out Executing: mpiifort -o /tmp/petsc-xt4fpc64/config.compilersFortran/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.compilersFortran/conftest.o -lstdc++ -ldl Defined "HAVE_FORTRAN_FLUSH" to "1" ================================================================================ TEST checkDependencyGenerationFlag from config.compilersFortran(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/compilersFortran.py:414) TESTING: checkDependencyGenerationFlag from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:414) Check if -MMD works for dependency generation, and add it if it does Trying FC compiler flag -MMD -MP Rejected FC compiler flag -MMD -MP Trying FC compiler flag -MMD Rejected FC compiler flag -MMD because no dependency file (/tmp/petsc-xt4fpc64/config.setCompilers/conftest.d) was generated Trying FC compiler flag -xMMD Rejected FC compiler flag -xMMD Trying FC compiler flag -qmakedep=gcc Rejected FC compiler flag -qmakedep=gcc Trying FC compiler flag -MD Rejected FC compiler flag -MD because no dependency file (/tmp/petsc-xt4fpc64/config.setCompilers/conftest.d) was generated Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilersFortran -fPIC -O3 -mtune=native -MMD -MP /tmp/petsc-xt4fpc64/config.setCompilers/conftest.F90 Possible ERROR while running compiler: stderr: ifort: command line warning #10006: ignoring unknown option '-MP' Source: program main end Rejecting compiler flag -MMD -MP due to ifort: command line warning #10006: ignoring unknown option '-MP' Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilersFortran -fPIC -O3 -mtune=native -MMD /tmp/petsc-xt4fpc64/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilersFortran -fPIC -O3 -mtune=native -xMMD /tmp/petsc-xt4fpc64/config.setCompilers/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: ifort: command line error: Unrecognized keyword 'MMD' for option '-x' Source: program main end Rejecting compiler flag -xMMD due to nonzero status from link Rejecting compiler flag -xMMD due to ifort: command line error: Unrecognized keyword 'MMD' for option '-x' PETSc Error: No output file produced Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilersFortran -fPIC -O3 -mtune=native -qmakedep=gcc /tmp/petsc-xt4fpc64/config.setCompilers/conftest.F90 Possible ERROR while running compiler: stderr: ifort: command line warning #10006: ignoring unknown option '-qmakedep=gcc' Source: program main end Rejecting compiler flag -qmakedep=gcc due to ifort: command line warning #10006: ignoring unknown option '-qmakedep=gcc' Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilersFortran -fPIC -O3 -mtune=native -MD /tmp/petsc-xt4fpc64/config.setCompilers/conftest.F90 Successful compile: Source: program main end child config.compilersFortran 2.959079 ================================================================================ TEST checkStdC from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:105) TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.headers/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.headers/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.headers/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.headers/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-xt4fpc64/config.headers/conftest to see if it can be run Executing: /tmp/petsc-xt4fpc64/config.headers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-xt4fpc64/config.headers/conftest ================================================================================ TEST checkStat from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:138) TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c ================================================================================ TEST checkSysWait from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:173) TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.headers/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:195) TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIME_H" to "1" ================================================================================ TEST checkMath from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:201) TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:201) Checks for the math headers and defines Checking for header: math.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.headers/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/conffix.h" 1 # 3 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 stderr: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "dos.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "dos.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "dos.h" #include ^: ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/conffix.h" 1 # 3 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 stderr: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "io.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "io.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "io.h" #include ^: ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/conffix.h" 1 # 3 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 stderr: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "machine/endian.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "machine/endian.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "machine/endian.h" #include ^: ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/conffix.h" 1 # 3 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 stderr: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "sys/systeminfo.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "sys/systeminfo.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "sys/systeminfo.h" #include ^: ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/conffix.h" 1 # 3 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 stderr: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "direct.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "direct.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "direct.h" #include ^: ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/conffix.h" 1 # 3 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 stderr: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "Ws2tcpip.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "Ws2tcpip.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "Ws2tcpip.h" #include ^: ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/conffix.h" 1 # 3 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 stderr: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "WindowsX.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "WindowsX.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "WindowsX.h" #include ^: ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/conffix.h" 1 # 3 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 stderr: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "ieeefp.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "ieeefp.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "ieeefp.h" #include ^: ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_INTTYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_IMMINTRIN_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/conffix.h" 1 # 3 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 1 3 typedef unsigned char __mmask8; typedef unsigned short __mmask16; typedef unsigned int __mmask32; typedef unsigned __int64 __mmask64; typedef __mmask16 __mmask; # 61 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 typedef union _MMINTRIN_TYPE(64) __m512 { float __m512_f32[16]; } __m512; typedef union _MMINTRIN_TYPE(64) __m512d { double __m512d_f64[8]; } __m512d; typedef union _MMINTRIN_TYPE(64) __m512i { __int64 m512i_gcc_compatibility[8]; __int8 m512i_i8[64]; __int16 m512i_i16[32]; __int32 m512i_i32[16]; __int64 m512i_i64[8]; unsigned __int8 m512i_u8[64]; unsigned __int16 m512i_u16[32]; unsigned __int32 m512i_u32[16]; unsigned __int64 m512i_u64[8]; int __m512i_i32[16]; } __m512i; # 106 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 typedef enum { _MM_SWIZ_REG_NONE, _MM_SWIZ_REG_CDAB, _MM_SWIZ_REG_BADC, _MM_SWIZ_REG_AAAA, _MM_SWIZ_REG_BBBB, _MM_SWIZ_REG_CCCC, _MM_SWIZ_REG_DDDD, _MM_SWIZ_REG_DACB } _MM_SWIZZLE_ENUM; typedef enum { _MM_BROADCAST32_NONE, _MM_BROADCAST_1X16, _MM_BROADCAST_4X16 } _MM_BROADCAST32_ENUM; typedef enum { _MM_BROADCAST64_NONE, _MM_BROADCAST_1X8, _MM_BROADCAST_4X8 } _MM_BROADCAST64_ENUM; typedef enum { _MM_ROUND_MODE_NEAREST, _MM_ROUND_MODE_DOWN, _MM_ROUND_MODE_UP, _MM_ROUND_MODE_TOWARD_ZERO, _MM_ROUND_MODE_DEFAULT } _MM_ROUND_MODE_ENUM; typedef enum { _MM_EXPADJ_NONE, _MM_EXPADJ_4, _MM_EXPADJ_5, _MM_EXPADJ_8, _MM_EXPADJ_16, _MM_EXPADJ_24, _MM_EXPADJ_31, _MM_EXPADJ_32 } _MM_EXP_ADJ_ENUM; typedef enum { _MM_SCALE_1 = 1, _MM_SCALE_2 = 2, _MM_SCALE_4 = 4, _MM_SCALE_8 = 8 } _MM_INDEX_SCALE_ENUM; typedef enum { _MM_PERM_AAAA = 0x00, _MM_PERM_AAAB = 0x01, _MM_PERM_AAAC = 0x02, _MM_PERM_AAAD = 0x03, _MM_PERM_AABA = 0x04, _MM_PERM_AABB = 0x05, _MM_PERM_AABC = 0x06, _MM_PERM_AABD = 0x07, _MM_PERM_AACA = 0x08, _MM_PERM_AACB = 0x09, _MM_PERM_AACC = 0x0A, _MM_PERM_AACD = 0x0B, _MM_PERM_AADA = 0x0C, _MM_PERM_AADB = 0x0D, _MM_PERM_AADC = 0x0E, _MM_PERM_AADD = 0x0F, _MM_PERM_ABAA = 0x10, _MM_PERM_ABAB = 0x11, _MM_PERM_ABAC = 0x12, _MM_PERM_ABAD = 0x13, _MM_PERM_ABBA = 0x14, _MM_PERM_ABBB = 0x15, _MM_PERM_ABBC = 0x16, _MM_PERM_ABBD = 0x17, _MM_PERM_ABCA = 0x18, _MM_PERM_ABCB = 0x19, _MM_PERM_ABCC = 0x1A, _MM_PERM_ABCD = 0x1B, _MM_PERM_ABDA = 0x1C, _MM_PERM_ABDB = 0x1D, _MM_PERM_ABDC = 0x1E, _MM_PERM_ABDD = 0x1F, _MM_PERM_ACAA = 0x20, _MM_PERM_ACAB = 0x21, _MM_PERM_ACAC = 0x22, _MM_PERM_ACAD = 0x23, _MM_PERM_ACBA = 0x24, _MM_PERM_ACBB = 0x25, _MM_PERM_ACBC = 0x26, _MM_PERM_ACBD = 0x27, _MM_PERM_ACCA = 0x28, _MM_PERM_ACCB = 0x29, _MM_PERM_ACCC = 0x2A, _MM_PERM_ACCD = 0x2B, _MM_PERM_ACDA = 0x2C, _MM_PERM_ACDB = 0x2D, _MM_PERM_ACDC = 0x2E, _MM_PERM_ACDD = 0x2F, _MM_PERM_ADAA = 0x30, _MM_PERM_ADAB = 0x31, _MM_PERM_ADAC = 0x32, _MM_PERM_ADAD = 0x33, _MM_PERM_ADBA = 0x34, _MM_PERM_ADBB = 0x35, _MM_PERM_ADBC = 0x36, _MM_PERM_ADBD = 0x37, _MM_PERM_ADCA = 0x38, _MM_PERM_ADCB = 0x39, _MM_PERM_ADCC = 0x3A, _MM_PERM_ADCD = 0x3B, _MM_PERM_ADDA = 0x3C, _MM_PERM_ADDB = 0x3D, _MM_PERM_ADDC = 0x3E, _MM_PERM_ADDD = 0x3F, _MM_PERM_BAAA = 0x40, _MM_PERM_BAAB = 0x41, _MM_PERM_BAAC = 0x42, _MM_PERM_BAAD = 0x43, _MM_PERM_BABA = 0x44, _MM_PERM_BABB = 0x45, _MM_PERM_BABC = 0x46, _MM_PERM_BABD = 0x47, _MM_PERM_BACA = 0x48, _MM_PERM_BACB = 0x49, _MM_PERM_BACC = 0x4A, _MM_PERM_BACD = 0x4B, _MM_PERM_BADA = 0x4C, _MM_PERM_BADB = 0x4D, _MM_PERM_BADC = 0x4E, _MM_PERM_BADD = 0x4F, _MM_PERM_BBAA = 0x50, _MM_PERM_BBAB = 0x51, _MM_PERM_BBAC = 0x52, _MM_PERM_BBAD = 0x53, _MM_PERM_BBBA = 0x54, _MM_PERM_BBBB = 0x55, _MM_PERM_BBBC = 0x56, _MM_PERM_BBBD = 0x57, _MM_PERM_BBCA = 0x58, _MM_PERM_BBCB = 0x59, _MM_PERM_BBCC = 0x5A, _MM_PERM_BBCD = 0x5B, _MM_PERM_BBDA = 0x5C, _MM_PERM_BBDB = 0x5D, _MM_PERM_BBDC = 0x5E, _MM_PERM_BBDD = 0x5F, _MM_PERM_BCAA = 0x60, _MM_PERM_BCAB = 0x61, _MM_PERM_BCAC = 0x62, _MM_PERM_BCAD = 0x63, _MM_PERM_BCBA = 0x64, _MM_PERM_BCBB = 0x65, _MM_PERM_BCBC = 0x66, _MM_PERM_BCBD = 0x67, _MM_PERM_BCCA = 0x68, _MM_PERM_BCCB = 0x69, _MM_PERM_BCCC = 0x6A, _MM_PERM_BCCD = 0x6B, _MM_PERM_BCDA = 0x6C, _MM_PERM_BCDB = 0x6D, _MM_PERM_BCDC = 0x6E, _MM_PERM_BCDD = 0x6F, _MM_PERM_BDAA = 0x70, _MM_PERM_BDAB = 0x71, _MM_PERM_BDAC = 0x72, _MM_PERM_BDAD = 0x73, _MM_PERM_BDBA = 0x74, _MM_PERM_BDBB = 0x75, _MM_PERM_BDBC = 0x76, _MM_PERM_BDBD = 0x77, _MM_PERM_BDCA = 0x78, _MM_PERM_BDCB = 0x79, _MM_PERM_BDCC = 0x7A, _MM_PERM_BDCD = 0x7B, _MM_PERM_BDDA = 0x7C, _MM_PERM_BDDB = 0x7D, _MM_PERM_BDDC = 0x7E, _MM_PERM_BDDD = 0x7F, _MM_PERM_CAAA = 0x80, _MM_PERM_CAAB = 0x81, _MM_PERM_CAAC = 0x82, _MM_PERM_CAAD = 0x83, _MM_PERM_CABA = 0x84, _MM_PERM_CABB = 0x85, _MM_PERM_CABC = 0x86, _MM_PERM_CABD = 0x87, _MM_PERM_CACA = 0x88, _MM_PERM_CACB = 0x89, _MM_PERM_CACC = 0x8A, _MM_PERM_CACD = 0x8B, _MM_PERM_CADA = 0x8C, _MM_PERM_CADB = 0x8D, _MM_PERM_CADC = 0x8E, _MM_PERM_CADD = 0x8F, _MM_PERM_CBAA = 0x90, _MM_PERM_CBAB = 0x91, _MM_PERM_CBAC = 0x92, _MM_PERM_CBAD = 0x93, _MM_PERM_CBBA = 0x94, _MM_PERM_CBBB = 0x95, _MM_PERM_CBBC = 0x96, _MM_PERM_CBBD = 0x97, _MM_PERM_CBCA = 0x98, _MM_PERM_CBCB = 0x99, _MM_PERM_CBCC = 0x9A, _MM_PERM_CBCD = 0x9B, _MM_PERM_CBDA = 0x9C, _MM_PERM_CBDB = 0x9D, _MM_PERM_CBDC = 0x9E, _MM_PERM_CBDD = 0x9F, _MM_PERM_CCAA = 0xA0, _MM_PERM_CCAB = 0xA1, _MM_PERM_CCAC = 0xA2, _MM_PERM_CCAD = 0xA3, _MM_PERM_CCBA = 0xA4, _MM_PERM_CCBB = 0xA5, _MM_PERM_CCBC = 0xA6, _MM_PERM_CCBD = 0xA7, _MM_PERM_CCCA = 0xA8, _MM_PERM_CCCB = 0xA9, _MM_PERM_CCCC = 0xAA, _MM_PERM_CCCD = 0xAB, _MM_PERM_CCDA = 0xAC, _MM_PERM_CCDB = 0xAD, _MM_PERM_CCDC = 0xAE, _MM_PERM_CCDD = 0xAF, _MM_PERM_CDAA = 0xB0, _MM_PERM_CDAB = 0xB1, _MM_PERM_CDAC = 0xB2, _MM_PERM_CDAD = 0xB3, _MM_PERM_CDBA = 0xB4, _MM_PERM_CDBB = 0xB5, _MM_PERM_CDBC = 0xB6, _MM_PERM_CDBD = 0xB7, _MM_PERM_CDCA = 0xB8, _MM_PERM_CDCB = 0xB9, _MM_PERM_CDCC = 0xBA, _MM_PERM_CDCD = 0xBB, _MM_PERM_CDDA = 0xBC, _MM_PERM_CDDB = 0xBD, _MM_PERM_CDDC = 0xBE, _MM_PERM_CDDD = 0xBF, _MM_PERM_DAAA = 0xC0, _MM_PERM_DAAB = 0xC1, _MM_PERM_DAAC = 0xC2, _MM_PERM_DAAD = 0xC3, _MM_PERM_DABA = 0xC4, _MM_PERM_DABB = 0xC5, _MM_PERM_DABC = 0xC6, _MM_PERM_DABD = 0xC7, _MM_PERM_DACA = 0xC8, _MM_PERM_DACB = 0xC9, _MM_PERM_DACC = 0xCA, _MM_PERM_DACD = 0xCB, _MM_PERM_DADA = 0xCC, _MM_PERM_DADB = 0xCD, _MM_PERM_DADC = 0xCE, _MM_PERM_DADD = 0xCF, _MM_PERM_DBAA = 0xD0, _MM_PERM_DBAB = 0xD1, _MM_PERM_DBAC = 0xD2, _MM_PERM_DBAD = 0xD3, _MM_PERM_DBBA = 0xD4, _MM_PERM_DBBB = 0xD5, _MM_PERM_DBBC = 0xD6, _MM_PERM_DBBD = 0xD7, _MM_PERM_DBCA = 0xD8, _MM_PERM_DBCB = 0xD9, _MM_PERM_DBCC = 0xDA, _MM_PERM_DBCD = 0xDB, _MM_PERM_DBDA = 0xDC, _MM_PERM_DBDB = 0xDD, _MM_PERM_DBDC = 0xDE, _MM_PERM_DBDD = 0xDF, _MM_PERM_DCAA = 0xE0, _MM_PERM_DCAB = 0xE1, _MM_PERM_DCAC = 0xE2, _MM_PERM_DCAD = 0xE3, _MM_PERM_DCBA = 0xE4, _MM_PERM_DCBB = 0xE5, _MM_PERM_DCBC = 0xE6, _MM_PERM_DCBD = 0xE7, _MM_PERM_DCCA = 0xE8, _MM_PERM_DCCB = 0xE9, _MM_PERM_DCCC = 0xEA, _MM_PERM_DCCD = 0xEB, _MM_PERM_DCDA = 0xEC, _MM_PERM_DCDB = 0xED, _MM_PERM_DCDC = 0xEE, _MM_PERM_DCDD = 0xEF, _MM_PERM_DDAA = 0xF0, _MM_PERM_DDAB = 0xF1, _MM_PERM_DDAC = 0xF2, _MM_PERM_DDAD = 0xF3, _MM_PERM_DDBA = 0xF4, _MM_PERM_DDBB = 0xF5, _MM_PERM_DDBC = 0xF6, _MM_PERM_DDBD = 0xF7, _MM_PERM_DDCA = 0xF8, _MM_PERM_DDCB = 0xF9, _MM_PERM_DDCC = 0xFA, _MM_PERM_DDCD = 0xFB, _MM_PERM_DDDA = 0xFC, _MM_PERM_DDDB = 0xFD, _MM_PERM_DDDC = 0xFE, _MM_PERM_DDDD = 0xFF } _MM_PERM_ENUM; typedef enum { _MM_FIXUP_NO_CHANGE, _MM_FIXUP_NEG_INF, _MM_FIXUP_NEG_ZERO, _MM_FIXUP_POS_ZERO, _MM_FIXUP_POS_INF, _MM_FIXUP_NAN, _MM_FIXUP_MAX_FLOAT, _MM_FIXUP_MIN_FLOAT } _MM_FIXUPRESULT_ENUM; # 298 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 typedef enum { _MM_UPCONV_PS_NONE, _MM_UPCONV_PS_FLOAT16, _MM_UPCONV_PS_UINT8, _MM_UPCONV_PS_SINT8, _MM_UPCONV_PS_UINT16, _MM_UPCONV_PS_SINT16 } _MM_UPCONV_PS_ENUM; # 343 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 typedef enum { _MM_UPCONV_EPI32_NONE, _MM_UPCONV_EPI32_UINT8, _MM_UPCONV_EPI32_SINT8, _MM_UPCONV_EPI32_UINT16, _MM_UPCONV_EPI32_SINT16 } _MM_UPCONV_EPI32_ENUM; # 368 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 375 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 typedef enum { _MM_UPCONV_PD_NONE } _MM_UPCONV_PD_ENUM; # 397 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 typedef enum { _MM_UPCONV_EPI64_NONE } _MM_UPCONV_EPI64_ENUM; # 442 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 typedef enum { _MM_DOWNCONV_PS_NONE, _MM_DOWNCONV_PS_FLOAT16, _MM_DOWNCONV_PS_UINT8, _MM_DOWNCONV_PS_SINT8, _MM_DOWNCONV_PS_UINT16, _MM_DOWNCONV_PS_SINT16 } _MM_DOWNCONV_PS_ENUM; typedef enum { _MM_DOWNCONV_EPI32_NONE, _MM_DOWNCONV_EPI32_UINT8, _MM_DOWNCONV_EPI32_SINT8, _MM_DOWNCONV_EPI32_UINT16, _MM_DOWNCONV_EPI32_SINT16 } _MM_DOWNCONV_EPI32_ENUM; typedef enum { _MM_DOWNCONV_PD_NONE } _MM_DOWNCONV_PD_ENUM; typedef enum { _MM_DOWNCONV_EPI64_NONE } _MM_DOWNCONV_EPI64_ENUM; # 515 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 549 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 573 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 683 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 708 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 780 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 823 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 typedef enum { _MM_CMPINT_EQ, _MM_CMPINT_LT, _MM_CMPINT_LE, _MM_CMPINT_UNUSED, _MM_CMPINT_NE, _MM_CMPINT_NLT, _MM_CMPINT_NLE } _MM_CMPINT_ENUM; # 848 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 873 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 881 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 906 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 913 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 943 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 956 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 986 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 999 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1040 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1073 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1091 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1142 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1227 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1278 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1334 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1421 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1478 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1500 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 typedef enum { _MM_MANT_NORM_1_2, _MM_MANT_NORM_p5_2, _MM_MANT_NORM_p5_1, _MM_MANT_NORM_p75_1p5 } _MM_MANTISSA_NORM_ENUM; typedef enum { _MM_MANT_SIGN_src, _MM_MANT_SIGN_zero, _MM_MANT_SIGN_nan } _MM_MANTISSA_SIGN_ENUM; # 1535 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1631 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1638 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1645 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1652 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1659 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1666 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1673 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1680 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"/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1939 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1961 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1983 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2005 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2046 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2128 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2146 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2192 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2231 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2259 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2287 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2316 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2349 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2408 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2425 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2439 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2456 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2472 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2511 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2551 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2890 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2960 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3042 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3061 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3091 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3202 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3219 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3236 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3261 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3269 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3294 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3366 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3373 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3381 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3388 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3396 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3407 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3626 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3633 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3641 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3648 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3656 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3663 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3671 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3678 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3687 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3694 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3702 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3709 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3717 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3724 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3732 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3739 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3761 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3768 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3776 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3783 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3935 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3942 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3950 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3957 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4120 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4128 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4136 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4144 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4157 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4164 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4172 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4180 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4189 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4197 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4205 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4213 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4222 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4230 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4238 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4245 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4253 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4261 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4269 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4277 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4285 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4293 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4301 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4309 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4317 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4324 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4332 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4339 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4457 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4470 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4524 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4533 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4546 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4555 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4572 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4580 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4588 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4596 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4658 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4668 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4679 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4689 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4705 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4725 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4746 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4775 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4814 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4823 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4841 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4855 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4869 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4883 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4892 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4914 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4928 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4942 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4956 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5007 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5017 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5029 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5039 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5050 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5060 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5072 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5082 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5093 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5103 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5126 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5137 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5147 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5170 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5196 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5327 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5337 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5347 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5357 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5364 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5371 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5381 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5391 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5404 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5411 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5418 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5453 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5469 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5500 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5514 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5528 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5546 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5572 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5629 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5636 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5643 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5650 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5657 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5664 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5671 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5678 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5685 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5692 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5699 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5759 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6363 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6388 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6396 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6421 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6429 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6454 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6462 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6487 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6495 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6520 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6528 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6553 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6561 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6586 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6636 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6661 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6692 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6699 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6724 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6731 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6756 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6787 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6794 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6819 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6826 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6851 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6882 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6889 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6914 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6921 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6946 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6977 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6984 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7009 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7016 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7041 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7444 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7452 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7467 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7475 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7520 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7528 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7543 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7551 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7568 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7576 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7593 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7601 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7649 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7657 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7672 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7680 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7695 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7703 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7718 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7726 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7743 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7751 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7766 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7774 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7796 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 8755 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 8818 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 8835 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 8906 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 8924 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 10361 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 10401 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 10563 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 11159 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 stderr: In file included from /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h(15): error: #error directive: "Header should only be included from ." #error "Header should only be included from ." ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: In file included from /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h(15): error: #error directive: "Header should only be included from ." #error "Header should only be included from ." ^ : Preprocess stderr after filtering: In file included from /tmp/petsc-xt4fpc64/config.headers/conftest.c(3):/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h(15): error: #error directive: "Header should only be included from ." #error "Header should only be included from ." ^: ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/conffix.h" 1 # 3 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 stderr: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "dos.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "dos.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "dos.h" #include ^: ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/conffix.h" 1 # 3 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 stderr: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "io.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "io.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "io.h" #include ^: ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/conffix.h" 1 # 3 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 stderr: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "machine/endian.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "machine/endian.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "machine/endian.h" #include ^: ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/conffix.h" 1 # 3 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 stderr: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "sys/systeminfo.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "sys/systeminfo.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "sys/systeminfo.h" #include ^: ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/conffix.h" 1 # 3 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 stderr: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "direct.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "direct.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "direct.h" #include ^: ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/conffix.h" 1 # 3 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 stderr: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "Ws2tcpip.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "Ws2tcpip.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "Ws2tcpip.h" #include ^: ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/conffix.h" 1 # 3 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 stderr: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "WindowsX.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "WindowsX.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "WindowsX.h" #include ^: ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/conffix.h" 1 # 3 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 stderr: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "ieeefp.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "ieeefp.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "ieeefp.h" #include ^: ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_INTTYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_IMMINTRIN_H" to "1" ================================================================================ TEST check from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/conffix.h" 1 # 3 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 1 3 typedef unsigned char __mmask8; typedef unsigned short __mmask16; typedef unsigned int __mmask32; typedef unsigned __int64 __mmask64; typedef __mmask16 __mmask; # 61 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 typedef union _MMINTRIN_TYPE(64) __m512 { float __m512_f32[16]; } __m512; typedef union _MMINTRIN_TYPE(64) __m512d { double __m512d_f64[8]; } __m512d; typedef union _MMINTRIN_TYPE(64) __m512i { __int64 m512i_gcc_compatibility[8]; __int8 m512i_i8[64]; __int16 m512i_i16[32]; __int32 m512i_i32[16]; __int64 m512i_i64[8]; unsigned __int8 m512i_u8[64]; unsigned __int16 m512i_u16[32]; unsigned __int32 m512i_u32[16]; unsigned __int64 m512i_u64[8]; int __m512i_i32[16]; } __m512i; # 106 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 typedef enum { _MM_SWIZ_REG_NONE, _MM_SWIZ_REG_CDAB, _MM_SWIZ_REG_BADC, _MM_SWIZ_REG_AAAA, _MM_SWIZ_REG_BBBB, _MM_SWIZ_REG_CCCC, _MM_SWIZ_REG_DDDD, _MM_SWIZ_REG_DACB } _MM_SWIZZLE_ENUM; typedef enum { _MM_BROADCAST32_NONE, _MM_BROADCAST_1X16, _MM_BROADCAST_4X16 } _MM_BROADCAST32_ENUM; typedef enum { _MM_BROADCAST64_NONE, _MM_BROADCAST_1X8, _MM_BROADCAST_4X8 } _MM_BROADCAST64_ENUM; typedef enum { _MM_ROUND_MODE_NEAREST, _MM_ROUND_MODE_DOWN, _MM_ROUND_MODE_UP, _MM_ROUND_MODE_TOWARD_ZERO, _MM_ROUND_MODE_DEFAULT } _MM_ROUND_MODE_ENUM; typedef enum { _MM_EXPADJ_NONE, _MM_EXPADJ_4, _MM_EXPADJ_5, _MM_EXPADJ_8, _MM_EXPADJ_16, _MM_EXPADJ_24, _MM_EXPADJ_31, _MM_EXPADJ_32 } _MM_EXP_ADJ_ENUM; typedef enum { _MM_SCALE_1 = 1, _MM_SCALE_2 = 2, _MM_SCALE_4 = 4, _MM_SCALE_8 = 8 } _MM_INDEX_SCALE_ENUM; typedef enum { _MM_PERM_AAAA = 0x00, _MM_PERM_AAAB = 0x01, _MM_PERM_AAAC = 0x02, _MM_PERM_AAAD = 0x03, _MM_PERM_AABA = 0x04, _MM_PERM_AABB = 0x05, _MM_PERM_AABC = 0x06, _MM_PERM_AABD = 0x07, _MM_PERM_AACA = 0x08, _MM_PERM_AACB = 0x09, _MM_PERM_AACC = 0x0A, _MM_PERM_AACD = 0x0B, _MM_PERM_AADA = 0x0C, _MM_PERM_AADB = 0x0D, _MM_PERM_AADC = 0x0E, _MM_PERM_AADD = 0x0F, _MM_PERM_ABAA = 0x10, _MM_PERM_ABAB = 0x11, _MM_PERM_ABAC = 0x12, _MM_PERM_ABAD = 0x13, _MM_PERM_ABBA = 0x14, _MM_PERM_ABBB = 0x15, _MM_PERM_ABBC = 0x16, _MM_PERM_ABBD = 0x17, _MM_PERM_ABCA = 0x18, _MM_PERM_ABCB = 0x19, _MM_PERM_ABCC = 0x1A, _MM_PERM_ABCD = 0x1B, _MM_PERM_ABDA = 0x1C, _MM_PERM_ABDB = 0x1D, _MM_PERM_ABDC = 0x1E, _MM_PERM_ABDD = 0x1F, _MM_PERM_ACAA = 0x20, _MM_PERM_ACAB = 0x21, _MM_PERM_ACAC = 0x22, _MM_PERM_ACAD = 0x23, _MM_PERM_ACBA = 0x24, _MM_PERM_ACBB = 0x25, _MM_PERM_ACBC = 0x26, _MM_PERM_ACBD = 0x27, _MM_PERM_ACCA = 0x28, _MM_PERM_ACCB = 0x29, _MM_PERM_ACCC = 0x2A, _MM_PERM_ACCD = 0x2B, _MM_PERM_ACDA = 0x2C, _MM_PERM_ACDB = 0x2D, _MM_PERM_ACDC = 0x2E, _MM_PERM_ACDD = 0x2F, _MM_PERM_ADAA = 0x30, _MM_PERM_ADAB = 0x31, _MM_PERM_ADAC = 0x32, _MM_PERM_ADAD = 0x33, _MM_PERM_ADBA = 0x34, _MM_PERM_ADBB = 0x35, _MM_PERM_ADBC = 0x36, _MM_PERM_ADBD = 0x37, _MM_PERM_ADCA = 0x38, _MM_PERM_ADCB = 0x39, _MM_PERM_ADCC = 0x3A, _MM_PERM_ADCD = 0x3B, _MM_PERM_ADDA = 0x3C, _MM_PERM_ADDB = 0x3D, _MM_PERM_ADDC = 0x3E, _MM_PERM_ADDD = 0x3F, _MM_PERM_BAAA = 0x40, _MM_PERM_BAAB = 0x41, _MM_PERM_BAAC = 0x42, _MM_PERM_BAAD = 0x43, _MM_PERM_BABA = 0x44, _MM_PERM_BABB = 0x45, _MM_PERM_BABC = 0x46, _MM_PERM_BABD = 0x47, _MM_PERM_BACA = 0x48, _MM_PERM_BACB = 0x49, _MM_PERM_BACC = 0x4A, _MM_PERM_BACD = 0x4B, _MM_PERM_BADA = 0x4C, _MM_PERM_BADB = 0x4D, _MM_PERM_BADC = 0x4E, _MM_PERM_BADD = 0x4F, _MM_PERM_BBAA = 0x50, _MM_PERM_BBAB = 0x51, _MM_PERM_BBAC = 0x52, _MM_PERM_BBAD = 0x53, _MM_PERM_BBBA = 0x54, _MM_PERM_BBBB = 0x55, _MM_PERM_BBBC = 0x56, _MM_PERM_BBBD = 0x57, _MM_PERM_BBCA = 0x58, _MM_PERM_BBCB = 0x59, _MM_PERM_BBCC = 0x5A, _MM_PERM_BBCD = 0x5B, _MM_PERM_BBDA = 0x5C, _MM_PERM_BBDB = 0x5D, _MM_PERM_BBDC = 0x5E, _MM_PERM_BBDD = 0x5F, _MM_PERM_BCAA = 0x60, _MM_PERM_BCAB = 0x61, _MM_PERM_BCAC = 0x62, _MM_PERM_BCAD = 0x63, _MM_PERM_BCBA = 0x64, _MM_PERM_BCBB = 0x65, _MM_PERM_BCBC = 0x66, _MM_PERM_BCBD = 0x67, _MM_PERM_BCCA = 0x68, _MM_PERM_BCCB = 0x69, _MM_PERM_BCCC = 0x6A, _MM_PERM_BCCD = 0x6B, _MM_PERM_BCDA = 0x6C, _MM_PERM_BCDB = 0x6D, _MM_PERM_BCDC = 0x6E, _MM_PERM_BCDD = 0x6F, _MM_PERM_BDAA = 0x70, _MM_PERM_BDAB = 0x71, _MM_PERM_BDAC = 0x72, _MM_PERM_BDAD = 0x73, _MM_PERM_BDBA = 0x74, _MM_PERM_BDBB = 0x75, _MM_PERM_BDBC = 0x76, _MM_PERM_BDBD = 0x77, _MM_PERM_BDCA = 0x78, _MM_PERM_BDCB = 0x79, _MM_PERM_BDCC = 0x7A, _MM_PERM_BDCD = 0x7B, _MM_PERM_BDDA = 0x7C, _MM_PERM_BDDB = 0x7D, _MM_PERM_BDDC = 0x7E, _MM_PERM_BDDD = 0x7F, _MM_PERM_CAAA = 0x80, _MM_PERM_CAAB = 0x81, _MM_PERM_CAAC = 0x82, _MM_PERM_CAAD = 0x83, _MM_PERM_CABA = 0x84, _MM_PERM_CABB = 0x85, _MM_PERM_CABC = 0x86, _MM_PERM_CABD = 0x87, _MM_PERM_CACA = 0x88, _MM_PERM_CACB = 0x89, _MM_PERM_CACC = 0x8A, _MM_PERM_CACD = 0x8B, _MM_PERM_CADA = 0x8C, _MM_PERM_CADB = 0x8D, _MM_PERM_CADC = 0x8E, _MM_PERM_CADD = 0x8F, _MM_PERM_CBAA = 0x90, _MM_PERM_CBAB = 0x91, _MM_PERM_CBAC = 0x92, _MM_PERM_CBAD = 0x93, _MM_PERM_CBBA = 0x94, _MM_PERM_CBBB = 0x95, _MM_PERM_CBBC = 0x96, _MM_PERM_CBBD = 0x97, _MM_PERM_CBCA = 0x98, _MM_PERM_CBCB = 0x99, _MM_PERM_CBCC = 0x9A, _MM_PERM_CBCD = 0x9B, _MM_PERM_CBDA = 0x9C, _MM_PERM_CBDB = 0x9D, _MM_PERM_CBDC = 0x9E, _MM_PERM_CBDD = 0x9F, _MM_PERM_CCAA = 0xA0, _MM_PERM_CCAB = 0xA1, _MM_PERM_CCAC = 0xA2, _MM_PERM_CCAD = 0xA3, _MM_PERM_CCBA = 0xA4, _MM_PERM_CCBB = 0xA5, _MM_PERM_CCBC = 0xA6, _MM_PERM_CCBD = 0xA7, _MM_PERM_CCCA = 0xA8, _MM_PERM_CCCB = 0xA9, _MM_PERM_CCCC = 0xAA, _MM_PERM_CCCD = 0xAB, _MM_PERM_CCDA = 0xAC, _MM_PERM_CCDB = 0xAD, _MM_PERM_CCDC = 0xAE, _MM_PERM_CCDD = 0xAF, _MM_PERM_CDAA = 0xB0, _MM_PERM_CDAB = 0xB1, _MM_PERM_CDAC = 0xB2, _MM_PERM_CDAD = 0xB3, _MM_PERM_CDBA = 0xB4, _MM_PERM_CDBB = 0xB5, _MM_PERM_CDBC = 0xB6, _MM_PERM_CDBD = 0xB7, _MM_PERM_CDCA = 0xB8, _MM_PERM_CDCB = 0xB9, _MM_PERM_CDCC = 0xBA, _MM_PERM_CDCD = 0xBB, _MM_PERM_CDDA = 0xBC, _MM_PERM_CDDB = 0xBD, _MM_PERM_CDDC = 0xBE, _MM_PERM_CDDD = 0xBF, _MM_PERM_DAAA = 0xC0, _MM_PERM_DAAB = 0xC1, _MM_PERM_DAAC = 0xC2, _MM_PERM_DAAD = 0xC3, _MM_PERM_DABA = 0xC4, _MM_PERM_DABB = 0xC5, _MM_PERM_DABC = 0xC6, _MM_PERM_DABD = 0xC7, _MM_PERM_DACA = 0xC8, _MM_PERM_DACB = 0xC9, _MM_PERM_DACC = 0xCA, _MM_PERM_DACD = 0xCB, _MM_PERM_DADA = 0xCC, _MM_PERM_DADB = 0xCD, _MM_PERM_DADC = 0xCE, _MM_PERM_DADD = 0xCF, _MM_PERM_DBAA = 0xD0, _MM_PERM_DBAB = 0xD1, _MM_PERM_DBAC = 0xD2, _MM_PERM_DBAD = 0xD3, _MM_PERM_DBBA = 0xD4, _MM_PERM_DBBB = 0xD5, _MM_PERM_DBBC = 0xD6, _MM_PERM_DBBD = 0xD7, _MM_PERM_DBCA = 0xD8, _MM_PERM_DBCB = 0xD9, _MM_PERM_DBCC = 0xDA, _MM_PERM_DBCD = 0xDB, _MM_PERM_DBDA = 0xDC, _MM_PERM_DBDB = 0xDD, _MM_PERM_DBDC = 0xDE, _MM_PERM_DBDD = 0xDF, _MM_PERM_DCAA = 0xE0, _MM_PERM_DCAB = 0xE1, _MM_PERM_DCAC = 0xE2, _MM_PERM_DCAD = 0xE3, _MM_PERM_DCBA = 0xE4, _MM_PERM_DCBB = 0xE5, _MM_PERM_DCBC = 0xE6, _MM_PERM_DCBD = 0xE7, _MM_PERM_DCCA = 0xE8, _MM_PERM_DCCB = 0xE9, _MM_PERM_DCCC = 0xEA, _MM_PERM_DCCD = 0xEB, _MM_PERM_DCDA = 0xEC, _MM_PERM_DCDB = 0xED, _MM_PERM_DCDC = 0xEE, _MM_PERM_DCDD = 0xEF, _MM_PERM_DDAA = 0xF0, _MM_PERM_DDAB = 0xF1, _MM_PERM_DDAC = 0xF2, _MM_PERM_DDAD = 0xF3, _MM_PERM_DDBA = 0xF4, _MM_PERM_DDBB = 0xF5, _MM_PERM_DDBC = 0xF6, _MM_PERM_DDBD = 0xF7, _MM_PERM_DDCA = 0xF8, _MM_PERM_DDCB = 0xF9, _MM_PERM_DDCC = 0xFA, _MM_PERM_DDCD = 0xFB, _MM_PERM_DDDA = 0xFC, _MM_PERM_DDDB = 0xFD, _MM_PERM_DDDC = 0xFE, _MM_PERM_DDDD = 0xFF } _MM_PERM_ENUM; typedef enum { _MM_FIXUP_NO_CHANGE, _MM_FIXUP_NEG_INF, _MM_FIXUP_NEG_ZERO, _MM_FIXUP_POS_ZERO, _MM_FIXUP_POS_INF, _MM_FIXUP_NAN, _MM_FIXUP_MAX_FLOAT, _MM_FIXUP_MIN_FLOAT } _MM_FIXUPRESULT_ENUM; # 298 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 typedef enum { _MM_UPCONV_PS_NONE, _MM_UPCONV_PS_FLOAT16, _MM_UPCONV_PS_UINT8, _MM_UPCONV_PS_SINT8, _MM_UPCONV_PS_UINT16, _MM_UPCONV_PS_SINT16 } _MM_UPCONV_PS_ENUM; # 343 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 typedef enum { _MM_UPCONV_EPI32_NONE, _MM_UPCONV_EPI32_UINT8, _MM_UPCONV_EPI32_SINT8, _MM_UPCONV_EPI32_UINT16, _MM_UPCONV_EPI32_SINT16 } _MM_UPCONV_EPI32_ENUM; # 368 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 375 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 typedef enum { _MM_UPCONV_PD_NONE } _MM_UPCONV_PD_ENUM; # 397 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 typedef enum { _MM_UPCONV_EPI64_NONE } _MM_UPCONV_EPI64_ENUM; # 442 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 typedef enum { _MM_DOWNCONV_PS_NONE, _MM_DOWNCONV_PS_FLOAT16, _MM_DOWNCONV_PS_UINT8, _MM_DOWNCONV_PS_SINT8, _MM_DOWNCONV_PS_UINT16, _MM_DOWNCONV_PS_SINT16 } _MM_DOWNCONV_PS_ENUM; typedef enum { _MM_DOWNCONV_EPI32_NONE, _MM_DOWNCONV_EPI32_UINT8, _MM_DOWNCONV_EPI32_SINT8, _MM_DOWNCONV_EPI32_UINT16, _MM_DOWNCONV_EPI32_SINT16 } _MM_DOWNCONV_EPI32_ENUM; typedef enum { _MM_DOWNCONV_PD_NONE } _MM_DOWNCONV_PD_ENUM; typedef enum { _MM_DOWNCONV_EPI64_NONE } _MM_DOWNCONV_EPI64_ENUM; # 515 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 549 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 573 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 683 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 708 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 780 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 823 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 typedef enum { _MM_CMPINT_EQ, _MM_CMPINT_LT, _MM_CMPINT_LE, _MM_CMPINT_UNUSED, _MM_CMPINT_NE, _MM_CMPINT_NLT, _MM_CMPINT_NLE } _MM_CMPINT_ENUM; # 848 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 873 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 881 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 906 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 913 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 943 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 956 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 986 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 999 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1040 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1073 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1091 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1142 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1227 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1278 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1334 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1421 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1478 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1500 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 typedef enum { _MM_MANT_NORM_1_2, _MM_MANT_NORM_p5_2, _MM_MANT_NORM_p5_1, _MM_MANT_NORM_p75_1p5 } _MM_MANTISSA_NORM_ENUM; typedef enum { _MM_MANT_SIGN_src, _MM_MANT_SIGN_zero, _MM_MANT_SIGN_nan } _MM_MANTISSA_SIGN_ENUM; # 1535 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1631 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1638 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1645 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1652 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1659 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1666 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1673 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1680 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1687 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1754 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1761 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1768 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1843 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1866 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1895 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1917 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1939 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1961 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 1983 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2005 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2046 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2128 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2146 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2192 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2231 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2259 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2287 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2316 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2349 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2408 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2425 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2439 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2456 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2472 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2511 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2551 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2890 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 2960 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3042 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3061 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3091 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3202 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3219 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3236 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3261 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3269 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3294 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3366 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3373 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3381 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3388 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3396 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3407 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3626 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3633 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3641 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3648 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3656 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3663 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3671 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3678 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3687 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3694 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3702 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3709 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3717 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3724 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3732 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3739 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3761 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3768 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3776 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3783 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3935 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3942 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3950 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 3957 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4120 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4128 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4136 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4144 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4157 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4164 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4172 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4180 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4189 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4197 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4205 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4213 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4222 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4230 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4238 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4245 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4253 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4261 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4269 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4277 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4285 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4293 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4301 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4309 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4317 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4324 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4332 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4339 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4457 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4470 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4524 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4533 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4546 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4555 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4572 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4580 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4588 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4596 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"/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4928 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4942 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4956 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5007 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5017 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5029 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5039 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5050 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5060 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5072 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5082 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5093 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5103 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5126 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5137 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5147 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5170 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5196 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5327 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5337 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5347 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5357 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5364 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5371 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5381 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5391 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5404 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5411 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5418 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5453 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5469 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5500 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5514 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5528 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5546 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5572 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5629 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5636 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5643 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5650 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5657 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5664 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5671 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5678 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5685 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5692 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5699 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 5759 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6363 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6388 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6396 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6421 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6429 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6454 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6462 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6487 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6495 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6520 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6528 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6553 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6561 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6586 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6636 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6661 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6692 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6699 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6724 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6731 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6756 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6787 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6794 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6819 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6826 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6851 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6882 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6889 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6914 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6921 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6946 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6977 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 6984 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7009 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7016 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7041 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7444 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7452 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7467 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7475 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7520 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7528 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7543 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7551 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7568 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7576 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7593 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7601 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7649 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7657 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7672 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7680 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7695 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7703 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7718 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7726 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7743 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7751 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7766 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7774 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 7796 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 8755 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 8818 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 8835 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 8906 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 8924 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 10361 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 10401 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 10563 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 11159 "/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h" 3 # 4 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 stderr: In file included from /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h(15): error: #error directive: "Header should only be included from ." #error "Header should only be included from ." ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: In file included from /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h(15): error: #error directive: "Header should only be included from ." #error "Header should only be included from ." ^ : Preprocess stderr after filtering: In file included from /tmp/petsc-xt4fpc64/config.headers/conftest.c(3):/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/include/icc/zmmintrin.h(15): error: #error directive: "Header should only be included from ." #error "Header should only be included from ." ^: ================================================================================ TEST checkRecursiveMacros from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:216) TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:216) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.headers/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } child config.headers 5.415151 ================================================================================ TEST configureCacheDetails from config.utilities.cacheDetails(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/utilities/cacheDetails.py:78) TESTING: configureCacheDetails from config.utilities.cacheDetails(config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. All intermediate test results are stored in /tmp/petsc-xt4fpc64/config.utilities.cacheDetails Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.utilities.cacheDetails/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.cacheDetails/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-xt4fpc64/config.utilities.cacheDetails/conftest to see if it can be run Executing: /tmp/petsc-xt4fpc64/config.utilities.cacheDetails/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-xt4fpc64/config.utilities.cacheDetails/conftest Defined "LEVEL1_DCACHE_LINESIZE" to "64" child config.utilities.cacheDetails 0.403029 ================================================================================ TEST check_struct_sigaction from config.types(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/types.py:43) TESTING: check_struct_sigaction from config.types(config/BuildSystem/config/types.py:43) Checks if "struct sigaction" exists in signal.h. This check is for C89 check. Checking for type: struct sigaction All intermediate test results are stored in /tmp/petsc-xt4fpc64/config.types Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.types/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { struct sigaction a;; return 0; } struct sigaction found Defined "HAVE_STRUCT_SIGACTION" to "1" ================================================================================ TEST check__int64 from config.types(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/types.py:49) TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:49) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.types/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { __int64 a;; return 0; } __int64 found Defined "HAVE___INT64" to "1" ================================================================================ TEST checkSizeTypes from config.types(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/types.py:55) TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:55) Checks for types associated with sizes, such as size_t. Checking for type: size_t Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.types/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/types.py:65) TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:65) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.types/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.types/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkIntegerTypes from config.types(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/types.py:60) TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:60) Checks for types associated with integers, such as int32_t. Checking for type: int32_t Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.types/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a;; return 0; } int32_t found ================================================================================ TEST checkPID from config.types(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/types.py:71) TESTING: checkPID from config.types(config/BuildSystem/config/types.py:71) Checks for pid_t, and defines it if necessary Checking for type: pid_t Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.types/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { pid_t a;; return 0; } pid_t found ================================================================================ TEST checkUID from config.types(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/types.py:75) TESTING: checkUID from config.types(config/BuildSystem/config/types.py:75) Checks for uid_t and gid_t, and defines them if necessary Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.types /tmp/petsc-xt4fpc64/config.types/conftest.c ================================================================================ TEST checkC99Complex from config.types(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/types.py:82) TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:82) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.types/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.types/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.types/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.types/conftest.o -lstdc++ -ldl Defined "HAVE_C99_COMPLEX" to "1" ================================================================================ TEST checkCxxComplex from config.types(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/types.py:93) TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:93) Check for complex numbers in namespace std Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/config.types/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.types -O3 -mtune=native -fPIC /tmp/petsc-xt4fpc64/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicpc -o /tmp/petsc-xt4fpc64/config.types/conftest -O3 -mtune=native /tmp/petsc-xt4fpc64/config.types/conftest.o -lstdc++ -ldl Defined "HAVE_CXX_COMPLEX" to "1" ================================================================================ TEST checkConst from config.types(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/types.py:104) TESTING: checkConst from config.types(config/BuildSystem/config/types.py:104) Checks for working const, and if not found defines it to empty string Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.types/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkSizeof from config.types(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.types/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Defined "SIZEOF_VOID_P" to "8" ================================================================================ TEST checkSizeof from config.types(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.types/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(short)==2)*2-1]; Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.types/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(int)==4)*2-1]; Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.types/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long)==8)*2-1]; Defined "SIZEOF_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.types/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long long)==8)*2-1]; Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: enum Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.types/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(enum{ENUM_DUMMY})==4)*2-1]; Defined "SIZEOF_ENUM" to "4" ================================================================================ TEST checkSizeof from config.types(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.types/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(size_t)==8)*2-1]; Defined "SIZEOF_SIZE_T" to "8" ================================================================================ TEST checkVisibility from config.types(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/types.py:194) TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:194) Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.types/conftest.o -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_C" to "1" Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/config.types/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.types -O3 -mtune=native -fPIC /tmp/petsc-xt4fpc64/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_CXX" to "1" child config.types 2.494520 ================================================================================ TEST configureMemAlign from PETSc.options.memAlign(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/options/memAlign.py:29) TESTING: configureMemAlign from PETSc.options.memAlign(config/PETSc/options/memAlign.py:29) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 child PETSc.options.memAlign 0.000811 ================================================================================ TEST check from config.libraries(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -lfpe -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: cannot find -lfpe ================================================================================ TEST check from config.libraries(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -lsocket -lnsl -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: cannot find -lsocket ================================================================================ TEST check from config.libraries(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -lfpe -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: cannot find -lfpe ================================================================================ TEST check from config.libraries(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -lsocket -lnsl -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: cannot find -lsocket ================================================================================ TEST checkMath from config.libraries(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/libraries.py:264) TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:264) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -lstdc++ -ldl CheckMath: using math library [] ================================================================================ TEST checkMathErf from config.libraries(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/libraries.py:283) TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:283) Check for erf() in libm, the math library Checking for functions [erf] in library [] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } int main() { _check_erf();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -lstdc++ -ldl erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkMathTgamma from config.libraries(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/libraries.py:292) TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:292) Check for tgamma() in libm, the math library Checking for functions [tgamma] in library [] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } int main() { _check_tgamma();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -lstdc++ -ldl tgamma() found Defined "HAVE_TGAMMA" to "1" ================================================================================ TEST checkMathLgamma from config.libraries(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/libraries.py:301) TESTING: checkMathLgamma from config.libraries(config/BuildSystem/config/libraries.py:301) Check for lgamma() in libm, the math library Checking for functions [lgamma] in library [] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include #include static void _check_lgamma() { double (*checkLgamma)(double) = lgamma;double x = 1,y; y = (*checkLgamma)(x);if (y != 0.) abort(); } int main() { _check_lgamma();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -lstdc++ -ldl lgamma() found Defined "HAVE_LGAMMA" to "1" ================================================================================ TEST checkMathFenv from config.libraries(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/libraries.py:314) TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:314) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library [] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -lstdc++ -ldl Defined "HAVE_FENV_H" to "1" ================================================================================ TEST checkMathLog2 from config.libraries(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/libraries.py:322) TESTING: checkMathLog2 from config.libraries(config/BuildSystem/config/libraries.py:322) Check for log2() in libm, the math library Checking for functions [log2] in library [] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } int main() { _check_log2();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -lstdc++ -ldl log2() found Defined "HAVE_LOG2" to "1" ================================================================================ TEST checkRealtime from config.libraries(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/libraries.py:331) TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:331) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -lstdc++ -ldl realtime functions are linked in by default ================================================================================ TEST checkDynamic from config.libraries(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/libraries.py:347) TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:347) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -ldl -lstdc++ -ldl Defined "HAVE_LIBDL" to "1" Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_DLFCN_H" to "1" child config.libraries 3.531649 ================================================================================ TEST configureLibraryOptions from PETSc.options.libraryOptions(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/options/libraryOptions.py:37) TESTING: configureLibraryOptions from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:37) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE, PETSC_USE_FORTRAN_KERNELS, and PETSC_USE_AVX512_KERNELS Defined "USE_LOG" to "1" Running Executable WITHOUT threads to time it out Executing: mpiicc -qversion Defined "USE_MALLOC_COALESCED" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Defined "USE_BACKWARD_LOOP" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-xt4fpc64/config.libraries/conftest.o: In function `main': conftest.c:(.text+0x2d): undefined reference to `bgl_perfctr_void' Checking for functions [ADIOI_BGL_Open] in library [''] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-xt4fpc64/config.libraries/conftest.o: In function `main': conftest.c:(.text+0x2d): undefined reference to `ADIOI_BGL_Open' *********BGL/IBM test failure Defined "USE_AVX512_KERNELS" to "1" Defined "Alignx(a,b)" to " " ================================================================================ TEST configureISColorValueType from PETSc.options.libraryOptions(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/options/libraryOptions.py:95) TESTING: configureISColorValueType from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:95) Sets PETSC_IS_COLORING_VALUE_TYPE, PETSC_MPIU_IS_COLORING_VALUE_TYPE, and PETSC_IS_COLORING_MAX as required by ISColoring Defined "MPIU_IS_COLORING_VALUE_TYPE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "USHRT_MAX" Defined "IS_COLORING_VALUE_TYPE" to "short" Defined "IS_COLORING_VALUE_TYPE_F" to "integer2" child PETSc.options.libraryOptions 0.733635 child config.atomics 0.000015 ================================================================================ TEST checkSysinfo from config.functions(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/functions.py:106) TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:106) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] All intermediate test results are stored in /tmp/petsc-xt4fpc64/config.functions Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.functions/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.functions/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SYSINFO" to "1" Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.functions/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.c Possible ERROR while running compiler: exit code 2 stderr: /tmp/petsc-xt4fpc64/config.functions/conftest.c(9): error: #error directive: "Cannot check sysinfo without special headers" # error "Cannot check sysinfo without special headers" ^ /tmp/petsc-xt4fpc64/config.functions/conftest.c(13): warning #266: function "sysinfo" declared implicitly char buf[10]; long count=10; sysinfo(1, buf, count); ^ compilation aborted for /tmp/petsc-xt4fpc64/config.functions/conftest.c (code 2) Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_SYS_SYSINFO_H # include #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } Compile failed inside link ================================================================================ TEST checkVPrintf from config.functions(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/functions.py:125) TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:125) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.functions/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.functions/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.o -lstdc++ -ldl ================================================================================ TEST checkVFPrintf from config.functions(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/functions.py:131) TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:131) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.functions/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.functions/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.o -lstdc++ -ldl ================================================================================ TEST checkVSNPrintf from config.functions(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/functions.py:137) TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:137) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.functions/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.functions/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_VSNPRINTF" to "1" ================================================================================ TEST checkNanosleep from config.functions(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/functions.py:167) TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:167) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.functions/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.functions/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_NANOSLEEP" to "1" ================================================================================ TEST checkMemmove from config.functions(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/functions.py:173) TESTING: checkMemmove from config.functions(config/BuildSystem/config/functions.py:173) Check for functional memmove() - as MS VC requires correct includes to for this test Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.functions/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char c1[1], c2[1] = "c"; size_t n=1; memmove(c1,c2,n); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.functions/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST checkSignalHandlerType from config.functions(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/functions.py:143) TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:143) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/config.functions/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -O3 -mtune=native -fPIC /tmp/petsc-xt4fpc64/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicpc -o /tmp/petsc-xt4fpc64/config.functions/conftest -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.o -lstdc++ -ldl Defined "SIGNAL_CAST" to " " ================================================================================ TEST checkFreeReturnType from config.functions(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/functions.py:153) TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:153) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.functions/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.c Possible ERROR while running compiler: exit code 2 stderr: /tmp/petsc-xt4fpc64/config.functions/conftest.c(6): error: a value of type "void" cannot be assigned to an entity of type "int" int ierr; void *p; ierr = free(p); return 0; ^ compilation aborted for /tmp/petsc-xt4fpc64/config.functions/conftest.c (code 2) Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ================================================================================ TEST checkVariableArgumentLists from config.functions(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/functions.py:159) TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:159) Checks whether the variable argument list functionality is working Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.functions/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.functions/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_VA_COPY" to "1" ================================================================================ TEST checkClassify from config.functions(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/functions.py:85) TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:85) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [readlink uname getdomainname dlerror _pipe access lseek gethostname PXFGETARG time getpagesize usleep sleep _sleep _access rand stricmp bzero _getcwd getcwd clock strcasecmp _snprintf gethostbyname socket popen getwd fork dlopen dlclose _mkdir sbreak drand48 _lseek memalign dlsym realpath getrusage snprintf _set_output_format] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.functions/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char readlink(); char uname(); char getdomainname(); char dlerror(); char _pipe(); char access(); char lseek(); char gethostname(); char PXFGETARG(); char time(); char getpagesize(); char usleep(); char sleep(); char _sleep(); char _access(); char rand(); char stricmp(); char bzero(); char _getcwd(); char getcwd(); char clock(); char strcasecmp(); char _snprintf(); char gethostbyname(); char socket(); char popen(); char getwd(); char fork(); char dlopen(); char dlclose(); char _mkdir(); char sbreak(); char drand48(); char _lseek(); char memalign(); char dlsym(); char realpath(); char getrusage(); char snprintf(); char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.functions/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-xt4fpc64/config.functions/conftest.o: In function `main': conftest.c:(.text+0xc4): warning: the `getwd' function is dangerous and should not be used. conftest.c:(.text+0x47): undefined reference to `_pipe' conftest.c:(.text+0x5f): undefined reference to `PXFGETARG' conftest.c:(.text+0x7a): undefined reference to `_sleep' conftest.c:(.text+0x81): undefined reference to `_access' conftest.c:(.text+0x8d): undefined reference to `stricmp' conftest.c:(.text+0x99): undefined reference to `_getcwd' conftest.c:(.text+0xaa): undefined reference to `_snprintf' conftest.c:(.text+0xde): undefined reference to `_mkdir' conftest.c:(.text+0xe5): undefined reference to `sbreak' conftest.c:(.text+0xf1): undefined reference to `_lseek' conftest.c:(.text+0x115): undefined reference to `_set_output_format' Checking for functions [readlink uname getdomainname dlerror gethostname time getpagesize usleep rand bzero clock] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.functions/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char readlink(); char uname(); char getdomainname(); char dlerror(); char gethostname(); char time(); char getpagesize(); char usleep(); char rand(); char bzero(); char clock(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.functions/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_READLINK" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_DLERROR" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_TIME" to "1" Defined "HAVE_GETPAGESIZE" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_RAND" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_CLOCK" to "1" Checking for functions [strcasecmp gethostbyname socket popen fork dlopen dlclose drand48 memalign dlsym realpath getrusage] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.functions/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char strcasecmp(); char gethostbyname(); char socket(); char popen(); char fork(); char dlopen(); char dlclose(); char drand48(); char memalign(); char dlsym(); char realpath(); char getrusage(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.functions/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_POPEN" to "1" Defined "HAVE_FORK" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_MEMALIGN" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_GETRUSAGE" to "1" Checking for functions [_pipe] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.functions/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _pipe(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.functions/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-xt4fpc64/config.functions/conftest.o: In function `main': conftest.c:(.text+0x2d): undefined reference to `_pipe' Checking for functions [access] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.functions/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.functions/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [lseek] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.functions/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.functions/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [PXFGETARG] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.functions/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.functions/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-xt4fpc64/config.functions/conftest.o: In function `main': conftest.c:(.text+0x2d): undefined reference to `PXFGETARG' Checking for functions [sleep] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.functions/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.functions/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [_sleep] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.functions/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.functions/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-xt4fpc64/config.functions/conftest.o: In function `main': conftest.c:(.text+0x2d): undefined reference to `_sleep' Checking for functions [_access] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.functions/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.functions/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-xt4fpc64/config.functions/conftest.o: In function `main': conftest.c:(.text+0x2d): undefined reference to `_access' Checking for functions [stricmp] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.functions/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.functions/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-xt4fpc64/config.functions/conftest.o: In function `main': conftest.c:(.text+0x2d): undefined reference to `stricmp' Checking for functions [_getcwd] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.functions/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.functions/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-xt4fpc64/config.functions/conftest.o: In function `main': conftest.c:(.text+0x2d): undefined reference to `_getcwd' Checking for functions [getcwd] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.functions/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.functions/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [_snprintf] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.functions/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.functions/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-xt4fpc64/config.functions/conftest.o: In function `main': conftest.c:(.text+0x2d): undefined reference to `_snprintf' Checking for functions [getwd] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.functions/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.functions/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: stderr: /tmp/petsc-xt4fpc64/config.functions/conftest.o: In function `main': conftest.c:(.text+0x2d): warning: the `getwd' function is dangerous and should not be used. Defined "HAVE_GETWD" to "1" Checking for functions [_mkdir] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.functions/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _mkdir(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.functions/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-xt4fpc64/config.functions/conftest.o: In function `main': conftest.c:(.text+0x2d): undefined reference to `_mkdir' Checking for functions [sbreak] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.functions/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.functions/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-xt4fpc64/config.functions/conftest.o: In function `main': conftest.c:(.text+0x2d): undefined reference to `sbreak' Checking for functions [_lseek] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.functions/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.functions/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-xt4fpc64/config.functions/conftest.o: In function `main': conftest.c:(.text+0x2d): undefined reference to `_lseek' Checking for functions [snprintf] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.functions/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.functions/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [_set_output_format] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.functions/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.functions/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-xt4fpc64/config.functions/conftest.o: In function `main': conftest.c:(.text+0x2d): undefined reference to `_set_output_format' ================================================================================ TEST checkMmap from config.functions(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/functions.py:179) TESTING: checkMmap from config.functions(config/BuildSystem/config/functions.py:179) Check for functional mmap() to allocate shared memory and define HAVE_MMAP Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.functions/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { int fd; fd=open("/tmp/file",O_RDWR); mmap((void*)0,100,PROT_READ|PROT_WRITE,MAP_SHARED,fd,0); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.functions/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_MMAP" to "1" child config.functions 9.048579 ================================================================================ TEST configureMemorySize from config.utilities.getResidentSetSize(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from config.utilities.getResidentSetSize(config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() child config.utilities.getResidentSetSize 0.001142 ================================================================================ TEST configureFortranCommandLine from config.utilities.fortranCommandLine(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/utilities/fortranCommandLine.py:27) TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(config/BuildSystem/config/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Checking for functions [] in library [''] [] Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.libraries -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.F90 Successful compile: Source: program main integer i character*(80) arg i = command_argument_count() call get_command_argument(i,arg) end Running Executable WITHOUT threads to time it out Executing: mpiifort -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -lstdc++ -ldl Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1" child config.utilities.fortranCommandLine 0.308804 ================================================================================ TEST configureFeatureTestMacros from config.utilities.featureTestMacros(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/utilities/featureTestMacros.py:13) TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support All intermediate test results are stored in /tmp/petsc-xt4fpc64/config.utilities.featureTestMacros Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 4 stderr: /tmp/petsc-xt4fpc64/config.utilities.featureTestMacros/conftest.c(4): catastrophic error: cannot open source file "sysctl.h" #include ^ compilation aborted for /tmp/petsc-xt4fpc64/config.utilities.featureTestMacros/conftest.c (code 4) Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } Defined "_GNU_SOURCE" to "1" child config.utilities.featureTestMacros 0.334155 ================================================================================ TEST configureMissingUtypeTypedefs from config.utilities.missing(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/utilities/missing.py:55) TESTING: configureMissingUtypeTypedefs from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:55) Checks if u_short is undefined All intermediate test results are stored in /tmp/petsc-xt4fpc64/config.utilities.missing Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ================================================================================ TEST configureMissingFunctions from config.utilities.missing(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/utilities/missing.py:61) TESTING: configureMissingFunctions from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:61) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from config.utilities.missing(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/utilities/missing.py:79) TESTING: configureMissingSignals from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:79) Check for missing signals, and define MISSING_ if necessary Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ================================================================================ TEST configureMissingGetdomainnamePrototype from config.utilities.missing(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/utilities/missing.py:96) TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:96) Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.missing -O3 -mtune=native -fPIC /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicpc -o /tmp/petsc-xt4fpc64/config.utilities.missing/conftest -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.o -lstdc++ -ldl ================================================================================ TEST configureMissingSrandPrototype from config.utilities.missing(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/utilities/missing.py:121) TESTING: configureMissingSrandPrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:121) Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.missing -O3 -mtune=native -fPIC /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicpc -o /tmp/petsc-xt4fpc64/config.utilities.missing/conftest -O3 -mtune=native /tmp/petsc-xt4fpc64/config.utilities.missing/conftest.o -lstdc++ -ldl child config.utilities.missing 2.716867 ================================================================================ TEST configureFPTrap from config.utilities.FPTrap(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/utilities/FPTrap.py:27) TESTING: configureFPTrap from config.utilities.FPTrap(config/BuildSystem/config/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/conffix.h" 1 # 3 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 stderr: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "sigfpe.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "sigfpe.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "sigfpe.h" #include ^: Checking for header: fpxcp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/conffix.h" 1 # 3 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 stderr: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "fpxcp.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "fpxcp.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "fpxcp.h" #include ^: Checking for header: floatingpoint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.headers /tmp/petsc-xt4fpc64/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/conffix.h" 1 # 3 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 stderr: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "floatingpoint.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "floatingpoint.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "floatingpoint.h" #include ^: child config.utilities.FPTrap 0.186876 ================================================================================ TEST configureScalarType from PETSc.options.scalarTypes(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/options/scalarTypes.py:40) TESTING: configureScalarType from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:40) Choose between real and complex numbers Defined "USE_COMPLEX" to "1" Scalar type is complex All intermediate test results are stored in /tmp/petsc-xt4fpc64/PETSc.options.scalarTypes Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/PETSc.options.scalarTypes/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISNORMAL" to "1" Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/PETSc.options.scalarTypes/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISNAN" to "1" Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/PETSc.options.scalarTypes/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISINF" to "1" ================================================================================ TEST configurePrecision from PETSc.options.scalarTypes(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/options/scalarTypes.py:81) TESTING: configurePrecision from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:81) Set the default real number precision for PETSc objects Checking C compiler works with __float128 Checking for functions [logq] in library ['quadmath'] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f; logq(f);; } int main() { _check_logq();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_LIBQUADMATH" to "1" C compiler with quadmath library Checking Fortran works with quadmath library Checking for functions [ ] in library ['quadmath'] [] Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.libraries -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.F90 Successful compile: Source: program main real*16 s,w; w = 2.0 ;s = cos(w) end Running Executable WITHOUT threads to time it out Executing: mpiifort -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_LIBQUADMATH" to "1" Fortran works with quadmath library Checking for functions [logq] in library ['quadmath'] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f; logq(f);; } int main() { _check_logq();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_LIBQUADMATH" to "1" Adding ['quadmath'] to LIBS Defined "HAVE_REAL___FLOAT128" to "1" Defined "USE_REAL_DOUBLE" to "1" Defined make macro "PETSC_SCALAR_SIZE" to "64" Precision is double child PETSc.options.scalarTypes 1.872793 ================================================================================ TEST configureMkdir from config.programs(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/programs.py:22) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /ssoft/spack/external/intel/2018.4/impi/2018.4.274/bin64/mkdir...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/bin/mkdir...not found Checking for program /ssoft/spack/external/intel/2018.4/vtune_amplifier_2018.4.0.573462/bin64/mkdir...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/intel64/mkdir...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/mkdir...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/automake-1.16.1-hcxryad24zomwxmdcxh4hpbgr467xp3r/bin/mkdir...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/m4-1.4.18-h33f3lybhm6walsacsss2tt2g4pkl7ue/bin/mkdir...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/autoconf-2.69-56wkkjdyc5qmqx4u5rbqjqbetygrygkl/bin/mkdir...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/cmake-3.14.4-kaggpee57xa4of7juzpykjw2wod4yxeh/bin/mkdir...not found Checking for program /home/yim/Nek5000/bin/mkdir...not found Checking for program /usr/lib64/ccache/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...found Running Executable WITHOUT threads to time it out Executing: /usr/bin/mkdir -p .conftest/tmp Adding -p flag to /usr/bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/usr/bin/mkdir -p" ================================================================================ TEST configureAutoreconf from config.programs(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/programs.py:44) TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /ssoft/spack/external/intel/2018.4/impi/2018.4.274/bin64/autoreconf...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/bin/autoreconf...not found Checking for program /ssoft/spack/external/intel/2018.4/vtune_amplifier_2018.4.0.573462/bin64/autoreconf...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/intel64/autoreconf...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/autoreconf...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/automake-1.16.1-hcxryad24zomwxmdcxh4hpbgr467xp3r/bin/autoreconf...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/m4-1.4.18-h33f3lybhm6walsacsss2tt2g4pkl7ue/bin/autoreconf...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/autoconf-2.69-56wkkjdyc5qmqx4u5rbqjqbetygrygkl/bin/autoreconf...found All intermediate test results are stored in /tmp/petsc-xt4fpc64/config.programs Running Executable WITHOUT threads to time it out Executing: ['/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/autoconf-2.69-56wkkjdyc5qmqx4u5rbqjqbetygrygkl/bin/autoreconf'] autoreconf test successful! Checking for program /ssoft/spack/external/intel/2018.4/impi/2018.4.274/bin64/libtoolize...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/bin/libtoolize...not found Checking for program /ssoft/spack/external/intel/2018.4/vtune_amplifier_2018.4.0.573462/bin64/libtoolize...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/intel64/libtoolize...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/libtoolize...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/automake-1.16.1-hcxryad24zomwxmdcxh4hpbgr467xp3r/bin/libtoolize...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/m4-1.4.18-h33f3lybhm6walsacsss2tt2g4pkl7ue/bin/libtoolize...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/autoconf-2.69-56wkkjdyc5qmqx4u5rbqjqbetygrygkl/bin/libtoolize...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/cmake-3.14.4-kaggpee57xa4of7juzpykjw2wod4yxeh/bin/libtoolize...not found Checking for program /home/yim/Nek5000/bin/libtoolize...not found Checking for program /usr/lib64/ccache/libtoolize...not found Checking for program /usr/local/bin/libtoolize...not found Checking for program /usr/bin/libtoolize...found ================================================================================ TEST configurePrograms from config.programs(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/programs.py:71) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:71) Check for the programs needed to build and run PETSc Checking for program /ssoft/spack/external/intel/2018.4/impi/2018.4.274/bin64/sh...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/bin/sh...not found Checking for program /ssoft/spack/external/intel/2018.4/vtune_amplifier_2018.4.0.573462/bin64/sh...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/intel64/sh...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/sh...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/automake-1.16.1-hcxryad24zomwxmdcxh4hpbgr467xp3r/bin/sh...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/m4-1.4.18-h33f3lybhm6walsacsss2tt2g4pkl7ue/bin/sh...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/autoconf-2.69-56wkkjdyc5qmqx4u5rbqjqbetygrygkl/bin/sh...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/cmake-3.14.4-kaggpee57xa4of7juzpykjw2wod4yxeh/bin/sh...not found Checking for program /home/yim/Nek5000/bin/sh...not found Checking for program /usr/lib64/ccache/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /usr/bin/sh...found Defined make macro "SHELL" to "/usr/bin/sh" Checking for program /ssoft/spack/external/intel/2018.4/impi/2018.4.274/bin64/sed...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/bin/sed...not found Checking for program /ssoft/spack/external/intel/2018.4/vtune_amplifier_2018.4.0.573462/bin64/sed...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/intel64/sed...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/sed...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/automake-1.16.1-hcxryad24zomwxmdcxh4hpbgr467xp3r/bin/sed...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/m4-1.4.18-h33f3lybhm6walsacsss2tt2g4pkl7ue/bin/sed...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/autoconf-2.69-56wkkjdyc5qmqx4u5rbqjqbetygrygkl/bin/sed...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/cmake-3.14.4-kaggpee57xa4of7juzpykjw2wod4yxeh/bin/sed...not found Checking for program /home/yim/Nek5000/bin/sed...not found Checking for program /usr/lib64/ccache/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" Running Executable WITHOUT threads to time it out Executing: /usr/bin/sed -i s/sed/sd/g "/tmp/petsc-xt4fpc64/config.programs/sed1" Adding SEDINPLACE cmd: /usr/bin/sed -i Defined make macro "SEDINPLACE" to "/usr/bin/sed -i" Checking for program /ssoft/spack/external/intel/2018.4/impi/2018.4.274/bin64/mv...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/bin/mv...not found Checking for program /ssoft/spack/external/intel/2018.4/vtune_amplifier_2018.4.0.573462/bin64/mv...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/intel64/mv...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/mv...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/automake-1.16.1-hcxryad24zomwxmdcxh4hpbgr467xp3r/bin/mv...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/m4-1.4.18-h33f3lybhm6walsacsss2tt2g4pkl7ue/bin/mv...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/autoconf-2.69-56wkkjdyc5qmqx4u5rbqjqbetygrygkl/bin/mv...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/cmake-3.14.4-kaggpee57xa4of7juzpykjw2wod4yxeh/bin/mv...not found Checking for program /home/yim/Nek5000/bin/mv...not found Checking for program /usr/lib64/ccache/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...found Defined make macro "MV" to "/usr/bin/mv" Checking for program /ssoft/spack/external/intel/2018.4/impi/2018.4.274/bin64/cp...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/bin/cp...not found Checking for program /ssoft/spack/external/intel/2018.4/vtune_amplifier_2018.4.0.573462/bin64/cp...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/intel64/cp...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/cp...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/automake-1.16.1-hcxryad24zomwxmdcxh4hpbgr467xp3r/bin/cp...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/m4-1.4.18-h33f3lybhm6walsacsss2tt2g4pkl7ue/bin/cp...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/autoconf-2.69-56wkkjdyc5qmqx4u5rbqjqbetygrygkl/bin/cp...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/cmake-3.14.4-kaggpee57xa4of7juzpykjw2wod4yxeh/bin/cp...not found Checking for program /home/yim/Nek5000/bin/cp...not found Checking for program /usr/lib64/ccache/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...found Defined make macro "CP" to "/usr/bin/cp" Checking for program /ssoft/spack/external/intel/2018.4/impi/2018.4.274/bin64/grep...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/bin/grep...not found Checking for program /ssoft/spack/external/intel/2018.4/vtune_amplifier_2018.4.0.573462/bin64/grep...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/intel64/grep...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/grep...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/automake-1.16.1-hcxryad24zomwxmdcxh4hpbgr467xp3r/bin/grep...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/m4-1.4.18-h33f3lybhm6walsacsss2tt2g4pkl7ue/bin/grep...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/autoconf-2.69-56wkkjdyc5qmqx4u5rbqjqbetygrygkl/bin/grep...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/cmake-3.14.4-kaggpee57xa4of7juzpykjw2wod4yxeh/bin/grep...not found Checking for program /home/yim/Nek5000/bin/grep...not found Checking for program /usr/lib64/ccache/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /ssoft/spack/external/intel/2018.4/impi/2018.4.274/bin64/rm...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/bin/rm...not found Checking for program /ssoft/spack/external/intel/2018.4/vtune_amplifier_2018.4.0.573462/bin64/rm...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/intel64/rm...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/rm...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/automake-1.16.1-hcxryad24zomwxmdcxh4hpbgr467xp3r/bin/rm...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/m4-1.4.18-h33f3lybhm6walsacsss2tt2g4pkl7ue/bin/rm...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/autoconf-2.69-56wkkjdyc5qmqx4u5rbqjqbetygrygkl/bin/rm...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/cmake-3.14.4-kaggpee57xa4of7juzpykjw2wod4yxeh/bin/rm...not found Checking for program /home/yim/Nek5000/bin/rm...not found Checking for program /usr/lib64/ccache/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...found Defined make macro "RM" to "/usr/bin/rm -f" Checking for program /ssoft/spack/external/intel/2018.4/impi/2018.4.274/bin64/diff...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/bin/diff...not found Checking for program /ssoft/spack/external/intel/2018.4/vtune_amplifier_2018.4.0.573462/bin64/diff...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/intel64/diff...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/diff...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/automake-1.16.1-hcxryad24zomwxmdcxh4hpbgr467xp3r/bin/diff...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/m4-1.4.18-h33f3lybhm6walsacsss2tt2g4pkl7ue/bin/diff...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/autoconf-2.69-56wkkjdyc5qmqx4u5rbqjqbetygrygkl/bin/diff...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/cmake-3.14.4-kaggpee57xa4of7juzpykjw2wod4yxeh/bin/diff...not found Checking for program /home/yim/Nek5000/bin/diff...not found Checking for program /usr/lib64/ccache/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found Running Executable WITHOUT threads to time it out Executing: "/usr/bin/diff" -w "/tmp/petsc-xt4fpc64/config.programs/diff1" "/tmp/petsc-xt4fpc64/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/lib/petsc/bin/win32fe/ps...not found Unable to find programs ['ps'] providing listing of each search directory to help debug Path provided in Python program Warning accessing /usr/ucb gives errors: [Errno 2] No such file or directory: '/usr/ucb' Warning accessing /usr/usb gives errors: [Errno 2] No such file or directory: '/usr/usb' Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] Defined make macro "PYTHON" to "/usr/bin/python3" Checking for program /ssoft/spack/external/intel/2018.4/impi/2018.4.274/bin64/m4...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/bin/m4...not found Checking for program /ssoft/spack/external/intel/2018.4/vtune_amplifier_2018.4.0.573462/bin64/m4...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/intel64/m4...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/m4...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/automake-1.16.1-hcxryad24zomwxmdcxh4hpbgr467xp3r/bin/m4...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/m4-1.4.18-h33f3lybhm6walsacsss2tt2g4pkl7ue/bin/m4...found Defined make macro "M4" to "/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/m4-1.4.18-h33f3lybhm6walsacsss2tt2g4pkl7ue/bin/m4" child config.programs 2.205497 ================================================================================ TEST configureMake from config.packages.make(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/make.py:87) TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:87) Check Guesses for GNU make Running Executable WITHOUT threads to time it out Executing: gmake --version stdout: GNU Make 3.82 Built for x86_64-redhat-linux-gnu Copyright (C) 2010 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. =============================================================================== ***** WARNING: You have an older version of Gnu make, it will work, but may not support all the parallel testing options. You can install the latest Gnu make with your package manager, such as brew or macports, or use the --download-make option to get the latest Gnu make ***** =============================================================================== Checking for program /ssoft/spack/external/intel/2018.4/impi/2018.4.274/bin64/gmake...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/bin/gmake...not found Checking for program /ssoft/spack/external/intel/2018.4/vtune_amplifier_2018.4.0.573462/bin64/gmake...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/intel64/gmake...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/gmake...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/automake-1.16.1-hcxryad24zomwxmdcxh4hpbgr467xp3r/bin/gmake...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/m4-1.4.18-h33f3lybhm6walsacsss2tt2g4pkl7ue/bin/gmake...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/autoconf-2.69-56wkkjdyc5qmqx4u5rbqjqbetygrygkl/bin/gmake...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/cmake-3.14.4-kaggpee57xa4of7juzpykjw2wod4yxeh/bin/gmake...not found Checking for program /home/yim/Nek5000/bin/gmake...not found Checking for program /usr/lib64/ccache/gmake...not found Checking for program /usr/local/bin/gmake...not found Checking for program /usr/bin/gmake...found Defined make macro "MAKE" to "/usr/bin/gmake" ================================================================================ TEST setupGNUMake from config.packages.make(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/make.py:121) TESTING: setupGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:121) Setup other GNU make stuff Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/gmake --print-directory" Defined make macro "OMAKE" to "/usr/bin/gmake --no-print-directory" Defined make macro "MAKE_PAR_OUT_FLG" to "" ================================================================================ TEST configureMakeNP from config.packages.make(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/make.py:168) TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:168) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 28 cores: using make_np = 21 Defined make macro "MAKE_NP" to "21" Defined make macro "MAKE_TEST_NP" to "14" Defined make macro "MAKE_LOAD" to "42.0" Defined make macro "NPMAX" to "28" child config.packages.make 0.016633 ================================================================================ TEST alternateConfigureLibrary from config.packages.OpenMPI(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.OpenMPI(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.OpenMPI 0.000799 Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ TEST alternateConfigureLibrary from config.packages.MPICH(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.MPICH 0.005658 ================================================================================ TEST checkDependencies from config.packages.MPI(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.MPI(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.MPI(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/MPI.py:616) TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:616) ================================================================================== Checking for a functional MPI Checking for library in Compiler specific search MPI: [] ================================================================================ TEST check from config.libraries(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Checking for optional headers [] in Compiler specific search MPI: ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkInclude from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Found header files [] in ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Checking for headers ['mpi.h'] in Compiler specific search MPI: ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkInclude from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Checking include with compiler flags var CPPFLAGS ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.headers -I/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['mpi.h'] in ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkMPIDistro from config.packages.MPI(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/MPI.py:477) TESTING: checkMPIDistro from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:477) Determine if MPICH_NUMVERSION, OMPI_MAJOR_VERSION or MSMPI_VER exist in mpi.h Used for consistency checking of MPI installation at compile time All intermediate test results are stored in /tmp/petsc-xt4fpc64/config.packages.MPI Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include const char *mpich_ver = I_MPI_VERSION; int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include const char *mpich_ver = I_MPI_VERSION; Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.packages.MPI /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c Unable to parse I_MPI version from header. Probably a buggy preprocessor Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c(4): warning #69: integer conversion resulted in truncation int mpich_ver = I_MPI_NUMVERSION; ^ Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = I_MPI_NUMVERSION; int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = I_MPI_NUMVERSION; Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.packages.MPI /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c Defined "HAVE_I_MPI_NUMVERSION" to "201800043000" Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 2 stderr: /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c(4): error: identifier "MVAPICH2_NUMVERSION" is undefined int mpich_ver = MVAPICH2_NUMVERSION; ^ compilation aborted for /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c (code 2) Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MVAPICH2_NUMVERSION; int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.packages.MPI /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c Defined "HAVE_MPICH_NUMVERSION" to "30200300" Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ TEST configureMPI2 from config.packages.MPI(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/MPI.py:252) TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:252) Check for functions added to the interface in MPI-2 Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_FINALIZED" to "1" Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_IN_PLACE" to "1" Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_REDUCE_LOCAL" to "1" Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_GET_LIBRARY_VERSION" to "1" Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_WIN_CREATE" to "1" Defined "HAVE_MPI_ONE_SIDED" to "1" ================================================================================ TEST configureMPI3 from config.packages.MPI(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/MPI.py:297) TESTING: configureMPI3 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:297) Check for functions added to the interface in MPI-3 Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm scomm; MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win; if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)); if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_PROCESS_SHARED_MEMORY" to "1" Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int send=0,recv,counts[2]={1,1},displs[2]={1,2}; MPI_Request req; if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_NONBLOCKING_COLLECTIVES" to "1" Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm distcomm; MPI_Request req; if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)); if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)); if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_NEIGHBORHOOD_COLLECTIVES" to "1" Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_GET_ACCUMULATE" to "1" Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_RGET" to "1" ================================================================================ TEST configureMPIEXEC from config.packages.MPI(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/MPI.py:174) TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:174) Checking for location of mpiexec Checking for program /ssoft/spack/external/intel/2018.4/impi/2018.4.274/bin64/mpiexec...found Running Executable with threads to time it out at 60 Executing: mpiexec -n 1 printenv stdout: LC_PAPER=fr_FR.UTF-8 MKLROOT=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl LMOD_FAMILY_COMPILER_VERSION=18.0.5 LMOD_FAMILY_LAPACK_VERSION=2018.5.274 MANPATH=/ssoft/spack/external/intel/2018.4/impi/2018.4.274/man:/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/man:/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/automake-1.16.1-hcxryad24zomwxmdcxh4hpbgr467xp3r/share/man:/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/m4-1.4.18-h33f3lybhm6walsacsss2tt2g4pkl7ue/share/man:/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/autoconf-2.69-56wkkjdyc5qmqx4u5rbqjqbetygrygkl/share/man:: LC_ADDRESS=fr_FR.UTF-8 M4_ROOT=/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/m4-1.4.18-h33f3lybhm6walsacsss2tt2g4pkl7ue XDG_SESSION_ID=143560 LC_MONETARY=fr_FR.UTF-8 HOSTNAME=fidis 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INTEL_ROOT=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux INTEL_MKL_ROOT=/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl no_proxy=10.91.10.254,fadmin1,fadmin2,.fidis,.epfl.ch,localhost,127.0.0.1,fdata1,fdata2 _ModuleTable002_=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 HTTP_PROXY=http://fadmin1:80 AUTOCONF_ROOT=/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/autoconf-2.69-56wkkjdyc5qmqx4u5rbqjqbetygrygkl LOGNAME=yim MPIF77=mpiifort 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CMAKE_PREFIX_PATH=/ssoft/spack/external/intel/2018.4/impi/2018.4.274:/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl:/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux:/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/automake-1.16.1-hcxryad24zomwxmdcxh4hpbgr467xp3r:/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/m4-1.4.18-h33f3lybhm6walsacsss2tt2g4pkl7ue:/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/autoconf-2.69-56wkkjdyc5qmqx4u5rbqjqbetygrygkl:/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/cmake-3.14.4-kaggpee57xa4of7juzpykjw2wod4yxeh XDG_RUNTIME_DIR=/run/user/187942 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__LMOD_REF_COUNT_MANPATH=/ssoft/spack/external/intel/2018.4/impi/2018.4.274/man:1;/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/man:1;/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/automake-1.16.1-hcxryad24zomwxmdcxh4hpbgr467xp3r/share/man:1;/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/m4-1.4.18-h33f3lybhm6walsacsss2tt2g4pkl7ue/share/man:1;/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/autoconf-2.69-56wkkjdyc5qmqx4u5rbqjqbetygrygkl/share/man:1 LMOD_LAPACK_VERSION=2018.5.274-rsnwv47 CMAKE_ROOT=/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/cmake-3.14.4-kaggpee57xa4of7juzpykjw2wod4yxeh LMOD_DIR=/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/lmod-8.1.5-ak4i4eudvamd3itdzikoe4lfmenjtfs2/lmod/lmod/libexec MPIF90=mpiifort proxy_host=fadmin1 LC_TIME=fr_FR.UTF-8 LMOD_FAMILY_MPI=intel-mpi I_MPI_ROOT=/ssoft/spack/external/intel/2018.4/impi/2018.4.274 MPICXX=mpiicpc LC_NAME=fr_FR.UTF-8 BASH_FUNC_module()=() { eval $($LMOD_CMD bash "$@") && eval $(${LMOD_SETTARG_CMD:-:} -s sh) } BASH_FUNC_ml()=() { eval $($LMOD_DIR/ml_cmd "$@") } _=/ssoft/spack/external/intel/2018.4/impi/2018.4.274/bin64/mpiexec HYDI_CONTROL_FD=9 I_MPI_INFO_NUMA_NODE_NUM=2 I_MPI_INFO_NUMA_NODE_MAP=mlx4_0:1 I_MPI_PERHOST=allcores MPIR_CVAR_NEMESIS_ENABLE_CKPOINT=1 GFORTRAN_UNBUFFERED_PRECONNECTED=y I_MPI_HYDRA_UUID=40640000-1bb8-be91-b1ad-050009010a5b DAPL_NETWORK_PROCESS_NUM=1 I_MPI_PM=hydra MPIR_CVAR_CH3_INTERFACE_HOSTNAME=fidis MPI_LOCALNRANKS=1 MPI_LOCALRANKID=0 PMI_RANK=0 PMI_FD=14 PMI_SIZE=1 I_MPI_INTERNAL_MEM_POLICY=default I_MPI_RANK_CMD=printenv I_MPI_CMD=mpiexec -n 1 printenv I_MPI_INFO_STATE=0 I_MPI_INFO_MODE=263 I_MPI_INFO_VEND=1 I_MPI_INFO_FLGB=35438523 I_MPI_INFO_FLGC=2147417079 I_MPI_INFO_FLGD=-1075053569 I_MPI_INFO_FLGCEXT=0 I_MPI_INFO_FLGDEXT=-1677720576 I_MPI_INFO_DESC=1342177285 I_MPI_INFO_BRAND=Intel(R) Xeon(R) I_MPI_INFO_SERIAL=E5-2690 v4 I_MPI_INFO_C_NAME=Unknown I_MPI_INFO_SIGN=263921 I_MPI_INFO_LCPU=28 I_MPI_INFO_PACK=0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,1,1,1,1,1,1,1,1,1,1,1 I_MPI_INFO_CORE=0,1,2,3,4,5,6,8,9,10,11,12,13,14,0,1,2,3,4,5,6,8,9,10,11,12,13,14 I_MPI_INFO_THREAD=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 I_MPI_INFO_CACHE1=0,1,2,3,4,5,6,8,9,10,11,12,13,14,16,17,18,19,20,21,22,24,25,26,27,28,29,30 I_MPI_INFO_CACHE2=0,1,2,3,4,5,6,8,9,10,11,12,13,14,16,17,18,19,20,21,22,24,25,26,27,28,29,30 I_MPI_INFO_CACHE3=0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,1,1,1,1,1,1,1,1,1,1,1 I_MPI_INFO_CACHES=3 I_MPI_INFO_CACHE_SHARE=2,2,32 I_MPI_INFO_CACHE_SIZE=32768,262144,36700160 I_MPI_INFO_NC=28 I_MPI_INFO_NP=2 I_MPI_PIN_MAPPING=1:0 0 I_MPI_PIN_INFO=x0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27 Defined "HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE" to "MPIR_CVAR_CH3" Defined make macro "MPIEXEC" to "mpiexec" Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Init(0,0); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Testing executable /tmp/petsc-xt4fpc64/config.packages.MPI/conftest to see if it can be run Executing: mpiexec -n 1 /tmp/petsc-xt4fpc64/config.packages.MPI/conftest Running Executable with threads to time it out at 60 Executing: mpiexec -n 1 /tmp/petsc-xt4fpc64/config.packages.MPI/conftest ================================================================================ TEST configureMPITypes from config.packages.MPI(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/MPI.py:344) TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:344) Checking for MPI Datatype handles Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Testing executable /tmp/petsc-xt4fpc64/config.packages.MPI/conftest to see if it can be run Executing: mpiexec -n 1 /tmp/petsc-xt4fpc64/config.packages.MPI/conftest Running Executable with threads to time it out at 60 Executing: mpiexec -n 1 /tmp/petsc-xt4fpc64/config.packages.MPI/conftest Defined "HAVE_MPI_LONG_DOUBLE" to "1" Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Testing executable /tmp/petsc-xt4fpc64/config.packages.MPI/conftest to see if it can be run Executing: mpiexec -n 1 /tmp/petsc-xt4fpc64/config.packages.MPI/conftest Running Executable with threads to time it out at 60 Executing: mpiexec -n 1 /tmp/petsc-xt4fpc64/config.packages.MPI/conftest Defined "HAVE_MPI_INT64_T" to "1" Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Testing executable /tmp/petsc-xt4fpc64/config.packages.MPI/conftest to see if it can be run Executing: mpiexec -n 1 /tmp/petsc-xt4fpc64/config.packages.MPI/conftest Running Executable with threads to time it out at 60 Executing: mpiexec -n 1 /tmp/petsc-xt4fpc64/config.packages.MPI/conftest Defined "HAVE_MPI_C_DOUBLE_COMPLEX" to "1" ================================================================================ TEST SGIMPICheck from config.packages.MPI(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/MPI.py:405) TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:405) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library [] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-xt4fpc64/config.libraries/conftest.o: In function `main': conftest.c:(.text+0x2d): undefined reference to `MPI_SGI_barrier' SGI MPI test failure ================================================================================ TEST CxxMPICheck from config.packages.MPI(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/MPI.py:415) TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:415) Make sure C++ can compile and link Checking for header mpi.h Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library [] [] Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/config.libraries -O3 -mtune=native -fPIC /tmp/petsc-xt4fpc64/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicpc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -lquadmath -lstdc++ -ldl ================================================================================ TEST FortranMPICheck from config.packages.MPI(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/MPI.py:431) TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:431) Make sure fortran include [mpif.h] and library symbols are found Checking for fortran mpi_init() Checking for functions [] in library [] [] Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.libraries -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.F90 Successful compile: Source: program main #include "mpif.h" integer ierr call mpi_init(ierr) end Running Executable WITHOUT threads to time it out Executing: mpiifort -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Checking for mpi.mod Checking for functions [] in library [] [] Running Executable WITHOUT threads to time it out Executing: mpiifort -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.libraries -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.F90 Successful compile: Source: program main use mpi integer ierr,rank call mpi_init(ierr) call mpi_comm_rank(MPI_COMM_WORLD,rank,ierr) end Running Executable WITHOUT threads to time it out Executing: mpiifort -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_F90MODULE" to "1" ================================================================================ TEST configureIO from config.packages.MPI(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/MPI.py:453) TESTING: configureIO from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:453) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); if (MPI_File_close(&fh)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPIIO" to "1" ================================================================================ TEST findMPIInc from config.packages.MPI(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/MPI.py:557) TESTING: findMPIInc from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:557) Find MPI include paths from "mpicc -show" and use with CUDAC_FLAGS ================================================================================ TEST PetscArchMPICheck from config.packages.MPI(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/MPI.py:591) TESTING: PetscArchMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:591) Checking for functions [MPI_Type_get_envelope MPI_Type_dup MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan MPI_Reduce_scatter MPI_Reduce_scatter_block] in library [] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } char MPI_Reduce_scatter(); static void _check_MPI_Reduce_scatter() { MPI_Reduce_scatter(); } char MPI_Reduce_scatter_block(); static void _check_MPI_Reduce_scatter_block() { MPI_Reduce_scatter_block(); } int main() { _check_MPI_Type_get_envelope(); _check_MPI_Type_dup(); _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan(); _check_MPI_Reduce_scatter(); _check_MPI_Reduce_scatter_block();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1" Defined "HAVE_MPI_TYPE_DUP" to "1" Defined "HAVE_MPI_INIT_THREAD" to "1" Defined "HAVE_MPI_IALLREDUCE" to "1" Defined "HAVE_MPI_IBARRIER" to "1" Defined "HAVE_MPI_FINALIZED" to "1" Defined "HAVE_MPI_EXSCAN" to "1" Defined "HAVE_MPI_REDUCE_SCATTER" to "1" Defined "HAVE_MPI_REDUCE_SCATTER_BLOCK" to "1" Checking for functions [MPIX_Iallreduce] in library [] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Iallreduce(); static void _check_MPIX_Iallreduce() { MPIX_Iallreduce(); } int main() { _check_MPIX_Iallreduce();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-xt4fpc64/config.libraries/conftest.o: In function `main': conftest.c:(.text+0x2d): undefined reference to `MPIX_Iallreduce' Checking for functions [MPIX_Ibarrier] in library [] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Ibarrier(); static void _check_MPIX_Ibarrier() { MPIX_Ibarrier(); } int main() { _check_MPIX_Ibarrier();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-xt4fpc64/config.libraries/conftest.o: In function `main': conftest.c:(.text+0x2d): undefined reference to `MPIX_Ibarrier' Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_CONTIGUOUS;; return 0; } Defined "HAVE_MPI_COMBINER_CONTIGUOUS" to "1" Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_NAMED;; return 0; } Defined "HAVE_MPI_COMBINER_NAMED" to "1" ================================================================================ TEST checkVersion from config.packages.MPI(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.MPI(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "mpi.h" ;petscpkgver(MPI_VERSION); Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.packages.MPI /tmp/petsc-xt4fpc64/config.packages.MPI/conftest.c For mpi need 2 <= 3 <= ================================================================================ TEST checkSharedLibrary from config.packages.MPI(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.MPI(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.MPI 9.799847 ================================================================================ TEST alternateConfigureLibrary from config.packages.zstd(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.zstd(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.zstd 0.001270 ================================================================================ TEST alternateConfigureLibrary from config.packages.yaml(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.yaml(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.yaml 0.000830 ================================================================================ TEST configureLibrary from config.packages.valgrind(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:868) TESTING: configureLibrary from config.packages.valgrind(config/BuildSystem/config/package.py:868) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional valgrind Not checking for library in Compiler specific search VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Compiler specific search VALGRIND: ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkInclude from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Found header files [] in ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Checking for headers ['valgrind/valgrind.h'] in Compiler specific search VALGRIND: ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkInclude from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Checking include with compiler flags var CPPFLAGS ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include /tmp/petsc-xt4fpc64/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/conffix.h" 1 # 3 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 stderr: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^: Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Package specific search directory VALGRIND: ['/usr/local/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkInclude from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/usr/local/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Found header files [] in ['/usr/local/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Checking for headers ['valgrind/valgrind.h'] in Package specific search directory VALGRIND: ['/usr/local/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkInclude from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/usr/local/include -I/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include /tmp/petsc-xt4fpc64/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/conffix.h" 1 # 3 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 stderr: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^: Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Package specific search directory VALGRIND: ['/usr/local/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkInclude from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/usr/local/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Found header files [] in ['/usr/local/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Checking for headers ['valgrind/valgrind.h'] in Package specific search directory VALGRIND: ['/usr/local/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkInclude from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/usr/local/include -I/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include /tmp/petsc-xt4fpc64/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/conffix.h" 1 # 3 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 stderr: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^: VALGRIND: SearchDir DirPath not found.. skipping: /opt/local Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux =============================================================================== It appears you do not have valgrind installed on your system. We HIGHLY recommend you install it from www.valgrind.org Or install valgrind-devel or equivalent using your package manager. Then rerun ./configure =============================================================================== child config.packages.valgrind 0.198622 ================================================================================ TEST alternateConfigureLibrary from config.packages.ssl(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.ssl(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.ssl 0.001269 ================================================================================ TEST alternateConfigureLibrary from config.packages.sprng(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.sprng(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.sprng 0.000838 Not a clone of PETSc or no Fortran compiler or fortran-bindings disabled, don't need Sowing child config.packages.sowing 0.000361 ================================================================================ TEST alternateConfigureLibrary from config.packages.revolve(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.revolve(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.revolve 0.000876 ================================================================================ TEST alternateConfigureLibrary from config.packages.radau5(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.radau5(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.radau5 0.000825 ================================================================================ TEST alternateConfigureLibrary from config.packages.pami(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.pami(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.pami 0.000706 ================================================================================ TEST alternateConfigureLibrary from config.packages.opengles(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.opengles(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.opengles 0.000707 ================================================================================ TEST alternateConfigureLibrary from config.packages.opencl(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.opencl(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.opencl 0.000715 ================================================================================ TEST alternateConfigureLibrary from config.packages.muparser(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.muparser(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.muparser 0.000822 ================================================================================ TEST alternateConfigureLibrary from config.packages.mpe(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.mpe(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.mpe 0.000826 ================================================================================ TEST alternateConfigureLibrary from config.packages.memkind(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.memkind(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.memkind 0.000739 ================================================================================ TEST alternateConfigureLibrary from config.packages.libmesh(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/libmesh.py:76) TESTING: alternateConfigureLibrary from config.packages.libmesh(config/BuildSystem/config/packages/libmesh.py:76) Defined make rule "libmesh-build" with dependencies "" and code [] Defined make rule "libmesh-install" with dependencies "" and code [] child config.packages.libmesh 0.001173 ================================================================================ TEST alternateConfigureLibrary from config.packages.moose(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.moose(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.moose 0.000755 ================================================================================ TEST alternateConfigureLibrary from config.packages.libjpeg(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.libjpeg(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.libjpeg 0.000823 ================================================================================ TEST alternateConfigureLibrary from config.packages.libceed(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.libceed(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.libceed 0.000816 Not a clone of PETSc, don't need Lgrind child config.packages.lgrind 0.000232 Defined "PYTHON_EXE" to ""/usr/bin/python3"" Running Executable WITHOUT threads to time it out Executing: /usr/bin/python3 -c "import Cython" Running Executable WITHOUT threads to time it out Executing: /usr/bin/python3 -c "import numpy" child config.packages.python 0.047206 ================================================================================ TEST alternateConfigureLibrary from config.packages.petsc4py(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/petsc4py.py:97) TESTING: alternateConfigureLibrary from config.packages.petsc4py(config/BuildSystem/config/packages/petsc4py.py:97) Defined make rule "petsc4py-build" with dependencies "" and code [] Defined make rule "petsc4py-install" with dependencies "" and code [] child config.packages.petsc4py 0.001748 ================================================================================ TEST alternateConfigureLibrary from config.packages.mpi4py(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/mpi4py.py:74) TESTING: alternateConfigureLibrary from config.packages.mpi4py(config/BuildSystem/config/packages/mpi4py.py:74) Defined make rule "mpi4py-build" with dependencies "" and code [] Defined make rule "mpi4py-install" with dependencies "" and code [] child config.packages.mpi4py 0.001261 ================================================================================ TEST checkDependencies from config.packages.slepc(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.slepc(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.slepc(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:868) TESTING: configureLibrary from config.packages.slepc(config/BuildSystem/config/package.py:868) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional slepc Looking for SLEPC at git.slepc, hg.slepc or a directory starting with ['slepc'] Could not locate an existing copy of SLEPC: [] Downloading slepc =============================================================================== Trying to download git://https://gitlab.com/slepc/slepc.git for SLEPC =============================================================================== Running Executable WITHOUT threads to time it out Executing: git clone https://gitlab.com/slepc/slepc.git /home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/fc/externalpackages/git.slepc stdout: Cloning into '/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/fc/externalpackages/git.slepc'... Looking for SLEPC at git.slepc, hg.slepc or a directory starting with ['slepc'] Found a copy of SLEPC in git.slepc Running Executable WITHOUT threads to time it out Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Running Executable WITHOUT threads to time it out Executing: ['git', 'cat-file', '-e', 'bf3875a^{commit}'] Running Executable WITHOUT threads to time it out Executing: ['git', 'rev-parse', 'bf3875a'] stdout: bf3875a1b07878458a73bcb41c5e5e290c6d516e Running Executable WITHOUT threads to time it out Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Running Executable WITHOUT threads to time it out Executing: ['git', 'clean', '-f', '-d', '-x'] Running Executable WITHOUT threads to time it out Executing: ['git', 'checkout', '-f', 'bf3875a1b07878458a73bcb41c5e5e290c6d516e'] Defined "HAVE_SLEPC" to "1" Defined make macro "SLEPC" to "yes" Defined make rule "slepcbuild" with dependencies "" and code ['@echo "*** Building slepc ***"', '@${RM} -f ${PETSC_ARCH}/lib/petsc/conf/slepc.errorflg', '@(cd /home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/fc/externalpackages/git.slepc && \\\n SLEPC_DIR=/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/fc/externalpackages/git.slepc PETSC_DIR=/home/yim/FreeFem-install-dev/ff-petsc/c PETSC_ARCH="" /usr/bin/python3 ./configure --with-clean --prefix=/home/yim/FreeFem-install-dev/ff-petsc/c && \\\n SLEPC_DIR=/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/fc/externalpackages/git.slepc PETSC_DIR=/home/yim/FreeFem-install-dev/ff-petsc/c PETSC_ARCH=installed-arch-linux2-c-opt-complex ${OMAKE} SLEPC_DIR=/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/fc/externalpackages/git.slepc PETSC_DIR=/home/yim/FreeFem-install-dev/ff-petsc/c PETSC_ARCH=installed-arch-linux2-c-opt-complex ) > ${PETSC_ARCH}/lib/petsc/conf/slepc.log 2>&1 || \\\n (echo "**************************ERROR*************************************" && \\\n echo "Error building slepc. Check ${PETSC_ARCH}/lib/petsc/conf/slepc.log" && \\\n echo "********************************************************************" && \\\n touch ${PETSC_ARCH}/lib/petsc/conf/slepc.errorflg && \\\n exit 1)'] Defined make rule "slepcinstall" with dependencies "" and code ['@echo "*** Installing slepc ***"', '@(cd /home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/fc/externalpackages/git.slepc && \\\n SLEPC_DIR=/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/fc/externalpackages/git.slepc PETSC_DIR=/home/yim/FreeFem-install-dev/ff-petsc/c PETSC_ARCH=installed-arch-linux2-c-opt-complex ${OMAKE} install SLEPC_DIR=/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/fc/externalpackages/git.slepc PETSC_DIR=/home/yim/FreeFem-install-dev/ff-petsc/c PETSC_ARCH=installed-arch-linux2-c-opt-complex ) >> ${PETSC_ARCH}/lib/petsc/conf/slepc.log 2>&1 || \\\n (echo "**************************ERROR*************************************" && \\\n echo "Error building slepc. Check ${PETSC_ARCH}/lib/petsc/conf/slepc.log" && \\\n echo "********************************************************************" && \\\n exit 1)'] Defined make rule "slepc-build" with dependencies "" and code [] Defined make rule "slepc-install" with dependencies "slepcbuild slepcinstall" and code [] =============================================================================== Slepc examples are available at ${PETSC_DIR}/fc/externalpackages/git.slepc export SLEPC_DIR=/home/yim/FreeFem-install-dev/ff-petsc/c =============================================================================== ================================================================================ TEST checkSharedLibrary from config.packages.slepc(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.slepc(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.slepc 6.816772 ================================================================================ TEST alternateConfigureLibrary from config.packages.gmp(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.gmp(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.gmp 0.000872 ================================================================================ TEST alternateConfigureLibrary from config.packages.mpfr(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.mpfr(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.mpfr 0.000822 ================================================================================ TEST alternateConfigureLibrary from config.packages.giflib(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.giflib(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.giflib 0.000815 ================================================================================ TEST alternateConfigureLibrary from config.packages.egads(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.egads(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.egads 0.000826 ================================================================================ TEST alternateConfigureLibrary from config.packages.ctetgen(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.ctetgen(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.ctetgen 0.000855 ================================================================================ TEST alternateConfigureLibrary from config.packages.concurrencykit(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.concurrencykit(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.concurrencykit 0.000820 ================================================================================ TEST locateC2html from config.packages.c2html(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/c2html.py:33) TESTING: locateC2html from config.packages.c2html(config/BuildSystem/config/packages/c2html.py:33) Looking for default C2html executable Checking for program /ssoft/spack/external/intel/2018.4/impi/2018.4.274/bin64/c2html...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/bin/c2html...not found Checking for program /ssoft/spack/external/intel/2018.4/vtune_amplifier_2018.4.0.573462/bin64/c2html...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/intel64/c2html...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/c2html...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/automake-1.16.1-hcxryad24zomwxmdcxh4hpbgr467xp3r/bin/c2html...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/m4-1.4.18-h33f3lybhm6walsacsss2tt2g4pkl7ue/bin/c2html...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/autoconf-2.69-56wkkjdyc5qmqx4u5rbqjqbetygrygkl/bin/c2html...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/cmake-3.14.4-kaggpee57xa4of7juzpykjw2wod4yxeh/bin/c2html...not found Checking for program /home/yim/Nek5000/bin/c2html...not found Checking for program /usr/lib64/ccache/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program /usr/bin/c2html...not found Checking for program /usr/local/sbin/c2html...not found Checking for program /usr/sbin/c2html...not found Checking for program /opt/ibutils/bin/c2html...not found Checking for program /home/yim/.local/bin/c2html...not found Checking for program /home/yim/bin/c2html...not found Checking for program /home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/lib/petsc/bin/win32fe/c2html...not found Unable to find programs ['c2html'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path ['mpirun', 'hydra_nameserver', 'mpiexec.hydra', 'mpifc', 'compchk.sh', 'mpitune', 'mpicleanup', 'pmi_proxy', 'mpicc', 'mpivars.csh', 'mpicxx', 'mpiicpc', 'IMB-MPI1', 'mpif77', 'tune', 'mpigcc', 'mpiicc', 'hydra_persist', 'IMB-NBC', 'cpuinfo', 'mpif90', 'mpivars.sh', 'IMB-RMA', 'mpiexec', 'mpiifort', 'llamaMPIClient.py', 'Llama', 'mpigxx'] ['mklvars.csh', 'mklvars.sh', 'pkgconfig'] ['amplxe-cl', 'sample', 'k1om', 'gui-freeze-handler', 'amplxe-sniper.py', 'pgo-report.py', 'prepare-debugfs.sh', 'sps-stop.sh', 'sep', 'aps-report', 'crashreport', 'pinbin', 'amplxe-gui', 'stackcollector', 'amplxe-runss', 'mem_bench', 'sps-start.sh', 'amplxe-runss.py', 'amplxe-perf-sync', 'self_check.py', 'amplxe-python', 'amplxe-perf', 'emon', 'amplxe-androidreg.sh', 'pin', 'aps', 'knl-lb', 'amplxe-dpdk', 'amplxe-python-exec', 'amplxe-pgo-report.sh', 'amplxe-self-checker.sh', 'amplxe-feedback'] ['mcpcom', 'gdb-igfx', 'xiar.cfg', 'offload_extract', 'profdcg', 'fortcom', 'loopprofileviewer.sh', 'profmerge', 'icpc.cfg', 'libcilkrts.so.5', 'loopprofileviewer.csh', 'ifort.cfg', 'tselect', 'codecov', 'icc', 'libintelremotemon.so', 'gcore-ia', 'proforder', 'icpc', 'gfx_sys_check', 'profmergesampling', 'ifort', 'fpp', 'dbmerge', 'xild.cfg', 'xild', 'icc.cfg', 'x86_64-linux.env', 'gdb-ia', 'xiar', 'map_opts'] ['intel64_gfx', 'ia32', 'link_install.sh', 'intel64', 'compilervars_global.csh', 'iccvars.csh', 'compilervars.sh', 'iccvars.sh', 'compilervars_arch.sh', 'ifortvars.csh', 'compilervars_global.sh', 'loopprofileviewer.jar', 'compilervars_arch.csh', 'compilervars.csh', 'ifortvars.sh'] ['automake-1.16', 'aclocal', 'automake', 'aclocal-1.16'] ['m4'] ['autoscan', 'autoconf', 'autoupdate', 'autom4te', 'autoheader', 'autoreconf', 'ifnames'] ['ctest', 'cpack', 'cmake', 'ccmake'] ['nekbmpi', 'prex', 'mvn', 'nekgit_push', 'neknek', 'git-hub', 'nekmpi', 'makenek', 'nek200s', 'cpn', 'mkSIZE', 'nek1000s', 'nekb', 'n2to3', 'neknekb', 'nek10s', 'nekgit_co', 'visnek', 'genbox', 'neknekb_mpmd', 'nek200steps', 'nekbb', 'nek', 'genmap', 'nek10steps', 'nekdist', 'nekgit_rm', 'nek1000steps', 'pretex', 'nekconfig'] ['x86_64-redhat-linux-gcc', 'c++', 'x86_64-redhat-linux-c++', 'cc', 'gcc', 'g++', 'x86_64-redhat-linux-g++'] ['mail.sh', 'munge.sh', 'git-proxy.sh', 'fsu', 'func.sh'] ['numactl', 'valgrind', 'abrt-action-analyze-vmcore', 'gpg-agent', 'dc', 'pcp', 'lprsetup.sh', 'openssl', 'abrt-action-analyze-backtrace', 'lslocks', 'krb5-config', 'podchecker', 'montage', 'abs2rel', 'sg_format', 'sss_ssh_knownhostsproxy', 'dm_date', 'ltrace', 'znew', 'pod2html', 'localedef', 'pango-list', 'ngettext', 'luac', 'numademo', 'rpmkeys', 'du', 'sync', 'tac', 'systemd-cat', 'nl-class-delete', 'abrt-handle-upload', 'open', 'theora_dump_video', 'nroff', 'virtualenv-3', 'script', 'desktop-file-validate', 'xdg-mime', 'latrace-ctl', 'systemd-coredumpctl', 'interdiff', 'slabtop', 'x86_64-redhat-linux-gcc', 'git-upload-archive', 'udaddy', 'md5sum', 'nl-rule-list', 'lsinitrd', 'nf-log', 'os-prober', 'file', 'db_dump185', 'tee', 'bzgrep', 'icuinfo', 'mwm', 'ksh93', 'xrefresh', 'db_dump', 'true', 'xzcmp', 'python3', 'lastlog', 'valgrind-listener', 'ranlib', 'msgcmp', 'c2ph', 'nl-cls-add', 'rvim', 'compare', 'mkfontdir', 'join', 'gawk', 'svnadmin', 'koi8rxterm', 'envsubst', 'xmbind', 'ibdmchk', 'gconftool-2', 'column', 'chcon', 'fdp', 'ibdiagnet_csv2xml.py', 'ibdev2netdev', 'reset', 'sattach', 'co', 'colrm', 'fio-verify-state', 'nslookup', 'sg_inq', 'pkexec', 'setup-nsssysinit', 'gtester', 'mailstat', 'python2', 'xterm', 'trust', 'py3-virtualenv', 'intltool-update', 'verify_blkparse', 'ibv_dctgt', 'su', 'sha384sum', 'jdeps', 'db_printlog', 'scriptreplay', 'dtestsrq', 'sbatch', 'pldd', 'cluster', 'sg_logs', 'hca_self_test.ofed', 'journalctl', 'hwloc-ps', 'unalias', 'xdg-desktop-menu', 'pango-view', 'xmodmap', 'ibnetsplit', 'pixeltool', 'pmpython', 'nice', 'aulastlog', 'sg_prevent', 'config_data', 'db_hotbackup', 'rcs', 'runcon', 'createlang', 'zip', 'ps2pdfwr', 'msgfmt', 'sg_reassign', 'mlxuptime', 'psed', 'makedb', 'ib_read_lat', 'blkiomon', 'kbdinfo', 'abrt-watch-log', 'xdg-screensaver', 'ypdomainname', 'gsoelim', 'xjc', 'dracut', 'purgestat', 'convert', 'composite', 'ibv_rc_pingpong', 'sg_sat_set_features', 'designer-qt4', 'dwz', 'genfio', 'keytool', 'tred', 'nettle-hash', 'rpm', 'rpmdb', 'psfgettable', 'gst-typefind-1.0', 'sg_rbuf', 'orbd', 'sudo', 'mlnx_perf', 'unicode_stop', 'cg_merge', 'redhat-support-tool', 'grub2-mkimage', 'gpasswd', 'xml-resolver', 'wsgen', 'grub2-render-label', 'abrt-action-install-debuginfo', 'abrt-action-analyze-oops', 'cg_annotate', 'twopi', 'jcmd', 'crash', 'pmdiff', 'geoipupdate', 'sccmap', 'mpi-selector-menu', 'tree', 'svnrdump', 'otftobdf', 'strings', 'namei', 'subscription-manager', 'm4', 'numastat', 'ibv_cc_pingpong', 'sctp_status', 'lesskey', 'stap-merge', 'ibcongest', 'unlink', 'tracepath6', 'sacctmgr', 'pminfo', 'genl-ctrl-list', 'pstree', 'recountdiff', 'gzip', 'systemd-delta', 'git-shell', 'showkey', 'rview', 'gdk-pixbuf-thumbnailer', 'raw_ethernet_lat', 'msgunfmt', 'eu-objdump', 'db_replicate', 'minit', 'xorg-x11-fonts-update-dirs', 'csslint-0.6', 'net-snmp-config', 'import', 'pathfix.py', 'psfxtable', 'sg_scan', 'rmail', 'shasum', 'pydoc', 'bzmore', 'cpio', 'ascp4', 'colcrt', 'reporter-ureport', 'otfview', 'size', 'rebuild-jar-repository', 'gconf-merge-tree', 'eu-elfcmp', 'autoreconf', 'ssh-keyscan', 'flex++', 'solterm', 'dbus-run-session', 'pr', 'grep', 'nl-tctree-list', 'rcopy', 'zipnote', 'telegraf', 'mstfwreset', 'setsid', 'pchrt', 'ps2ps', 'mpi-selector', 'fg', 'gprof', 'mlnx_qcn', 'find-jar', 'pango-querymodules-64', 'eqn', 'gsettings-data-convert', 'zfgrep', 'stap-prep', 'zforce', 'base64', 'systemd-detect-virt', 'gettext', 'ldapmodify', 'javadoc', 'opjitconv', 'basename', 'fc-query', 'abrt-action-perform-ccpp-analysis', 'gss-client', 'quotasync', 'sha224sum', 'rcsfreeze', 'nop', 'pinentry-curses', 'sg_read', 'dir', 'conjure', 'wc', 'sudoreplay', 'pip2.7', 'shuf', 'mandb', 'dump2slvl.pl', 'cpan', 'mcra', 'pod2latex', 'rxe_cfg', 'db47_deadlock', 'bzdiff', 'pmtrace', 'openipmi_eventd', 'libpng15-config', 'dbus-daemon', 'domainname', 'sg_ses', 'chrt', 'ident', 'uic3', 'zgrep', 'mailx', 'stty', 'texi2any', 'prune', 'run_perftest_loopback', 'prove', 'chfn', 'openipmish', 'iowatcher', 'mlxpci', 'gst-launch-0.10', 'sinfo', 'gdbus-codegen', 'ipmitool', 'uuidgen', 'sg_unmap', 'gst-typefind-0.10', 'ypchfn', 'iceauth', 'nl-neightbl-list', 'git', 'mm2gv', 'ib_atomic_bw', 'xml-xread', 'rlogin-cwd', 'pkill', 'droplang', 'lscpu', 'javac', 'eu-addr2line', 'stap', 'install', 'gtk-update-icon-cache', 'pyvenv', 'dbpmda', 'gsbj', 'whatis', 'pgawk', 'mdevices_info', 'db47_dump', 'instmodsh', 'ksh', 'mstmcra', 'cscope', 'fc-cache', 'serialver', 'dircolors', 'bno_plot.py', 'pmafm', 'pwdx', 'Sshare', 'lsb_release', 'pmie2col', 'rm', 'rsvg-convert', 'gml2gv', 'pmlogcheck', 'lwp-dump', 'db_deadlock', 'perlbug', 'pmlogger', 'ibdiagpath', 'display', 'chsh', 'valgrind-di-server', 'lpunlock', 'png2theora', 'diff', 'qttracereplay', 'python-config', 'secret-tool', 'split', 'ibv_xsrq_pingpong', 'pmloglabel', 'automake', 'xml_spellcheck', 'groff', 'printf', 'qhelpconverter', 'hwloc-calc', 'rsvg-view-3', 'echo', 'sgm_dd', 'policytool', 'col', 'systemd-run', 'lconvert', 'passmass', 'scancel', 'makeinfo', 'rftp', 'gzexe', 'scsi_ready', 'mlxfwreset', 'ps', 'db_archive', 'cpan2dist', 'bootctl', 'umask', 'hwloc-compress-dir', 'scsi-rescan', 'lexgrog', 'gvmap.sh', 'ldapadd', 'shcomp', 'xgamma', 'gxl2dot', 'setvtrgb', 'systemd-loginctl', 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'sg_reset', 'ib_send_lat', 'net-snmp-create-v3-user', 'tclsh8.5', 'opgprof', 'svnsync', 'mailq.postfix', 'xzgrep', 'fio2gnuplot', 'lslogins', 'abrt-action-analyze-ccpp-local', 'snice', 'ncat', 'nf-ct-add', 'splain', 'btt', 'locale', 'mlxreg_ext', 'sss_ssh_authorizedkeys', 'sg', 'dtestcm', 'gtroff', 'unpack200', 'realpath', 'scp', 'ssh-agent', 'net-snmp-config-x86_64', 'msgmerge', 'nl-class-add', 'intltool-merge', 'od', 'ping', 'ndptool', 'ibv_dcini', 'mkdir', 'ucmatose', 'h2xs', 'nl-class-list', 'sdrcomp', 'msgconv', 'libtool', 'jinfo', 'fc-scan', 'linux32', 'sg_decode_sense', 'acyclic', 'netstat', 'more', 'ibdmtr', 'pkcheck', 'python3.6m-config', 'pmgenmap', 'theora_encode', 'orc-bugreport', 'iconv', 'gfortran', 'gst-feedback-0.10', 'rdma_client', 'ocount', 'getconf', 'msgexec', 'gpg-connect-agent', 'run-parts', 'ps2pdf13', 'sexp-conv', 'dm_zdump', 'grub2-mknetdir', 'btrace', 'lastcomm', 'grub2-kbdcomp', 'pre-grohtml', 'arch', 'gvgen'] [] ['anacron', 'setfiles', 'xfs_quota', 'firewalld', 'umount.nfs', 'parted', 'rpc.gssd', 'perfquery', 'quot', 'e2label', 'nl-class-delete', 'hwclock', 'btrfs-zero-log', 'dmidecode', 'rpcdebug', 'hprcu', 'fsck.btrfs', 'ibcheckerrors', 'ibccquery', 'nl-cls-add', 'mkdict', 'postkick', 'userhelper', 'xfs_metadump', 'xfs_copy', 'iptables-save', 'grub2-sparc64-setup', 'ypset', 'telinit', 'convertquota', 'dump_lfts.sh', 'ibswportwatch.pl', 'redhat_lsb_trigger.x86_64', 'sldd.sh', 'request-key', 'eipoib_daemon', 'ibdatacounters', 'rbsureset', 'ibaddr', 'key.dns_resolver', 'dracut', 'xfs_ncheck', 'pidof', 'unsetupRoot', 'ppp-watch', 'quotaoff', 'blkdeactivate', 'autrace', 'auditctl', 'mkfs.ext4', 'iprinit', 'pam_console_apply', 'groupdel', 'ibclearerrors', 'routef', 'xqmstats', 'chronyd', 'saslauthd', 'subscription-manager', 'selinuxdefcon', 'btrfs-map-logical', 'selabel_lookup', 'set_irq_affinity_cpulist.sh', 'xfs_rtcp', 'rhn-channel', 'tracepath6', 'genl-ctrl-list', 'netreport', 'ibcheckport', 'zic', 'ipset', 'lpasswd', 'editmap.sendmail', 'findfs', 'show_gids', 'yptest', 'fuser', 'e2undo', 'rtpr', 'install-info', 'virt-what', 'nfsdcltrack', 'glibc_post_upgrade.i686', 'hwquery', 'ibfindnodesusing.pl', 'authconfig-tui', 'hp-setbootorder', 'quotacheck', 'setquota', 'wpa_cli', 'kpartx', 'ibsysstat', 'swaplabel', 'postdrop', 'packer', 'sendmail.sendmail', 'ip6tables', 'sefcontext_compile', 'update-smart-drivedb', 'visudo', 'set_irq_affinity_bynode.sh', 'grpunconv', 'ibacm', 'consoletype', 'semodule', 'vpddecode', 'ibprintca.pl', 'nfsiostat', 'selabel_partial_match', 'swapoff', 'gssproxy', 'ntpdc', 'ip6tables-save', 'sulogin', 'rhnreg_ks', 'dump-acct', 'ibcheckstate', 'ipmievd', 'genl', 'rtstat', 'fsck.xfs', 'srp_daemon', 'lgroupdel', 'mii-tool', 'nstat', 'rpc.statd', 'dump-utmp', 'saslpasswd2', 'pwunconv', 'clockdiff', 'fsck.minix', 'restorecon', 'smartctl', 'ntpdate', 'halt', 'ibtracert', 'usernetctl', 'lsof', 'kexec', 'pwck', 'common_irq_affinity.sh', 'ibcheckwidth', 'xfs_growfs', 'devlink', 'abrtd', 'luseradd', 'testsaslauthd', 'lgroupadd', 'vigr', 'setenforce', 'readprofile', 'grub2-bios-setup', 'sshd-keygen', 'modinfo', 'mountstats', 'mailstats', 'arp', 'xfs_freeze', 'tcpdmatch', 'fsck.ext3', 'addgnupghome', 'praliases', 'smrsh', 'ibping', 'grub2-install', 'cma_roce_mode', 'smparquery', 'matchpathcon', 'abrt-harvest-pstoreoops', 'uuserver', 'wpa_passphrase', 'ausearch', 'dmsetup', 'xfs_bmap', 'clock', 'ip', 'udevadm', 'btrfs-debug-tree', 'btrfsck', 'killall5', 'btrfs-find-root', 'ntptime', 'setbootorder', 'rmmod', 'mcelog', 'zramctl', 'ibsrpdm', 'vendstat', 'iprconfig', 'blockdev', 'intel-microcode2ucode', 'installkernel', 'conrep', 'connectx_port_config', 'fsfreeze', 'sa', 'logrotate', 'iconvconfig.x86_64', 'grub2-mkconfig', 'set_irq_affinity.sh', 'iptables', 'postalias', 'update-pciids', 'ifdown', 'fsck.cramfs', 'start-statd', 'btrfs-convert', 'abrt-install-ccpp-hook', 'snmpd', 'try-from', 'ibdatacounts', 'cracklib-check', 'xfs_db', 'mkfs.minix', 'vmcore-dmesg', 'grub2-get-kernel-settings', 'editmap', 'ibcheckerrs', 'mkfs.xfs', 'makemap', 'tickadj', 'nl-qdisc-add', 'hp-conrep', 'debugfs', 'logsave', 'ibroute', 'mlnx_affinity', 'sm-notify', 'ss', 'newusers', 'compat_gid_gen', 'new-kernel-pkg', 'slurmstepd', 'unix_update', 'ctstat', 'abrt-configuration', 'pifconfig', 'ibmirror', 'resize2fs', 'vendor_pre_uninstall.sh', 'pam_timestamp_check', 'sushell', 'atrun', 'adduser', 'agetty', 'tuned-adm', 'automount', 'sminfo', 'ldattach', 'sasldblistusers2', 'ibdiscover.pl', 'safe_finger', 'selabel_lookup_best_match', 'rpc.mountd', 'rhn_register', 'postlock', 'ibchecknode', 'smpquery', 'ibprintswitch.pl', 'smpdump', 'routel', 'xfs_mkfile', 'tc', 'ldconfig', 'plymouth-set-default-theme', 'rdisc', 'ebtables-save', 'ibclearcounters', 'fxload', 'fsck.ext2', 'sendmail.postfix', 'opensm', 'ether-wake', 'nhc-wrapper', 'e2fsck', 'avcstat', 'ifstat', 'mount.nfs4', 'postconf', 'grpconv', 'switch_root', 'service', 'ibstatus', 'nl-qdisc-list', 'reboot', 'unix_chkpwd', 'rpcbind', 'spacewalk-channel', 'xfs_info', 'getpcaps', 'nl-cls-list', 'iblinkinfo', 'mkdumprd', 'smartd', 'setup_mr_cache.sh', 'cfdisk', 'hwloc-dump-hwdata', 'filefrag', 'arpd', 'ibcacheedit', 'rpc.nfsd', 'dmstats', 'runuser', 'iblinkinfo.pl', 'chpasswd', 'ibportstate', 'ownership', 'tracepath', 'check_lft_balance.pl', 'mkfs.ext3', 'ibqueryerrors.pl', 'iptables-restore', 'rpcinfo', 'ifhw', 'ib2ib_setup', 'ebtables-restore', 'sysinfo-snapshot.py', 'userdel', 'iconvconfig.i686', 'getenforce', 'rpc.rquotad', 'cbq', 'nl-classid-lookup', 'btrfstune', 'sestatus', 'odp_stat.sh', 'rhnsd', 'xfs_io', 'crond', 'usermod', 'saquery', 'ip6tables-restore', 'auditd', 'grub2-ofpathname', 'sendmail', 'cacertdir_rehash', 'mlnx_tune', 'grubby', 'nologin', 'statemgr', 'abrt-auto-reporting', 'postlog', 'postsuper', 'lnstat', 'postfix', 'grub2-probe', 'sysctl', 'lpc', 'ibrouters', 'snmptrapd', 'oddjobd', 'hardlink', 'slattach', 'nl-cls-delete', 'weak-modules', 'chcpu', 'lchage', 'fixfiles', 'rpc.idmapd', 'atd', 'lspci', 'ntpq', 'modprobe', 'sln', 'ctrlaltdel', 'slurmd', 'pivot_root', 'rhn_check', 'tune2fs', 'sshd', 'lgroupmod', 'ipoibd', 'NetworkManager', 'ifenslave', 'cracklib-unpacker', 'lsmod', 'mkfs.cramfs', 'iconvconfig', 'cma_roce_tos', 'mkhomedir_helper', 'ibswitches', 'mkfs.btrfs', 'selinuxconlist', 'genhomedircon', 'init', 'osd_login', 'tuned', 'biosdecode', 'runlevel', 'pwhistory_helper', 'quotaon', 'plipconfig', 'update-alternatives', 'rsyslogd', 'hp-discovery', 'capsh', 'yppoll', 'alternatives', 'bridge', 'ebtables', 'swapon', 'fsck', 'tcpd', 'showmount', 'osmtest', 'xfs_repair', 'nl-qdisc-delete', 'nhc-genconf', 'ibchecknet', 'ibqueryerrors', 'partx', 'show_counters', 'arping', 'iprdump', 'e2freefrag', 'groupadd', 'luserdel', 'rtmon', 'chkconfig', 'xfs_estimate', 'glibc_post_upgrade.x86_64', 'xtables-multi', 'partprobe', 'chroot', 'dump_fts', 'pethtool', 'dmfilemapd', 'nameif', 'hp-ifhw', 'accessdb', 'umount.nfs4', 'accton', 'ibhosts', 'quotastats', 'setupRoot', 'btrfs', 'show_irq_affinity.sh', 'hp-hwquery', 'selinux_restorecon', 'fsck.ext4', 'xfs_logprint', 'mkfs', 'btrfs-image', 'run_srp_daemon', 'mii-diag', 'faillock', 'ntpd', 'hpdiscovery', 'powertop', 'grub2-macbless', 'selabel_digest', 'e2image', 'shutdown', 'sys-unconfig', 'delpart', 'rhn-profile-sync', 'authconfig', 'xfs_fsr', 'ibstat', 'nhc', 'ibnodes', 'setpci', 'tcsd', 'addpart', 'applygnupgdefaults', 'ibcheckportwidth', 'postcat', 'nfsstat', 'irqbalance', 'sosreport', 'setcap', 'depmod', 'abrt-harvest-vmcore', 'route', 'hp-rcu', 'create-cracklib-dict', 'setsebool', 'set_nodedesc.sh', 'mount.nfs', 'mke2fs', 'edquota', 'blkdiscard', 'wipefs', 'zdump', 'augenrules', 'ifcfg', 'pam_tally2', 'ibnetdiscover', 'repquota', 'cracklib-packer', 'vendor_post_uninstall.sh', 'sysctl_perf_tuning', 'nl-pktloc-lookup', 'eapol_test', 'xfs_admin', 'lshw', 'ifup', 'dhclient-script', 'sfdisk', 'hp-reboot', 'cracklib-format', 'lusermod', 'selinuxenabled', 'xfs_mdrestore', 'vipw', 'pluginviewer', 'blkid', 'smtp-sink', 'genhostid', 'ping6', 'fdisk', 'show_irq_affinity_hints.sh', 'ipmaddr', 'losetup', 'grpck', 'ofed_uninstall.sh', 'load_policy', 'audispd', 'rtacct', 'lid', 'dhclient', 'gss-server', 'sim_server', 'lpc.cups', 'iptunnel', 'getsebool', 'nfsidmap', 'poweroff', 'ypbind', 'iprsos', 'getcap', 'plymouthd', 'pwconv', 'abrt-dbus', 'mkfs.ext2', 'grub2-set-default', 'btrfs-select-super', 'grub2-reboot', 'lo100cfg', 'biosdevname', 'selinuxexeccon', 'abrt-server', 'ibidsverify.pl', 'rtcwake', 'build-locale-archive', 'ibccconfig', 'ibprintrt.pl', 'iprdbg', 'resizepart', 'sssd', 'postqueue', 'nl-link-list', 'hp-rbsureset', 'munged', 'sss_cache', 'srp_daemon.sh', 'latencytop-tui', 'grub2-rpm-sort', 'dump_mfts.sh', 'badblocks', 'aureport', 'makedumpfile', 'postmulti', 'groupmems', 'grub2-setpassword', 'dumpe2fs', 'makemap.sendmail', 'ntp-keygen', 'postmap', 'fstrim', 'blkmapd', 'fdformat', 'groupmod', 'nl-class-add', 'insmod', 'ifconfig', 'e4defrag', 'exportfs', 'nl-class-list', 'iotop', 'hp-statemgr', 'ethtool', 'mkswap', 'iprupdate', 'mklost+found', 'useradd', 'ibcheckportstate', 'wpa_supplicant', 'latencytop', 'lnewusers', 'hp-lo100cfg', 'smtp-source'] ['ibdmchk', 'dump2slvl.pl', 'mkSimNodeDir', 'IBMgtSim', 'ibdiagpath', 'ibnlparse', 'ibdiagnet', 'ibmsquit', 'ibis', 'ibmssh', 'ibdiagui', 'RunSimTest', 'ibdmsh', 'ibtopodiff', 'dump2psl.pl', 'ibdmtr'] Warning accessing /home/yim/.local/bin gives errors: [Errno 2] No such file or directory: '/home/yim/.local/bin' Warning accessing /home/yim/bin gives errors: [Errno 2] No such file or directory: '/home/yim/bin' Path provided by --with-executables-search-path ['win32fe.exe', 'win32feutils.dll'] child config.packages.c2html 0.005947 ================================================================================ TEST alternateConfigureLibrary from config.packages.boost(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.boost(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.boost 0.000838 ================================================================================ TEST alternateConfigureLibrary from config.packages.silo(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.silo(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.silo 0.000817 ================================================================================ TEST alternateConfigureLibrary from config.packages.Random123(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.Random123(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.Random123 0.000818 ================================================================================ TEST alternateConfigureLibrary from config.packages.PARTY(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.PARTY(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.PARTY 0.000808 ================================================================================ TEST alternateConfigureLibrary from config.packages.Matlab(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.Matlab(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.Matlab 0.000637 ================================================================================ TEST alternateConfigureLibrary from config.packages.MatlabEngine(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.MatlabEngine 0.000697 ================================================================================ TEST alternateConfigureLibrary from config.packages.Mathematica(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.Mathematica(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.Mathematica 0.000703 ================================================================================ TEST checkDependencies from config.packages.regex(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.regex(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.regex(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:868) TESTING: configureLibrary from config.packages.regex(config/BuildSystem/config/package.py:868) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional regex Checking for library in Compiler specific search REGEX: [] ================================================================================ TEST check from config.libraries(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [regexec regcomp regfree] in library [] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char regexec(); static void _check_regexec() { regexec(); } char regcomp(); static void _check_regcomp() { regcomp(); } char regfree(); static void _check_regfree() { regfree(); } int main() { _check_regexec(); _check_regcomp(); _check_regfree();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Checking for optional headers [] in Compiler specific search REGEX: ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkInclude from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Found header files [] in ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Checking for headers ['regex.h'] in Compiler specific search REGEX: ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkInclude from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['regex.h'] in ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Checking include with compiler flags var CPPFLAGS ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['regex.h'] in ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkVersion from config.packages.regex(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.regex(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ================================================================================ TEST checkSharedLibrary from config.packages.regex(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.regex(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.regex 0.373676 ================================================================================ TEST alternateConfigureLibrary from config.packages.opengl(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.opengl(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.opengl 0.001142 ================================================================================ TEST alternateConfigureLibrary from config.packages.glut(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.glut(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.glut 0.000717 ================================================================================ TEST alternateConfigureLibrary from config.packages.CoDiPack(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.CoDiPack(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.CoDiPack 0.000809 ================================================================================ TEST alternateConfigureLibrary from config.packages.adblaslapack(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.adblaslapack(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.adblaslapack 0.000814 ================================================================================ TEST alternateConfigureLibrary from config.packages.cuda(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.cuda(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.cuda 0.000697 child config.packages.cxxlibs 0.000016 ================================================================================ TEST alternateConfigureLibrary from config.packages.ADOLC(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.ADOLC(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.ADOLC 0.000821 ================================================================================ TEST locateCMake from config.packages.cmake(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/cmake.py:51) TESTING: locateCMake from config.packages.cmake(config/BuildSystem/config/packages/cmake.py:51) Looking for default CMake executable Checking for program /ssoft/spack/external/intel/2018.4/impi/2018.4.274/bin64/cmake...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/bin/cmake...not found Checking for program /ssoft/spack/external/intel/2018.4/vtune_amplifier_2018.4.0.573462/bin64/cmake...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/intel64/cmake...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/cmake...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/automake-1.16.1-hcxryad24zomwxmdcxh4hpbgr467xp3r/bin/cmake...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/m4-1.4.18-h33f3lybhm6walsacsss2tt2g4pkl7ue/bin/cmake...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/autoconf-2.69-56wkkjdyc5qmqx4u5rbqjqbetygrygkl/bin/cmake...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/cmake-3.14.4-kaggpee57xa4of7juzpykjw2wod4yxeh/bin/cmake...found Defined make macro "CMAKE" to "/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/cmake-3.14.4-kaggpee57xa4of7juzpykjw2wod4yxeh/bin/cmake" Looking for default CTest executable Checking for program /ssoft/spack/external/intel/2018.4/impi/2018.4.274/bin64/ctest...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/bin/ctest...not found Checking for program /ssoft/spack/external/intel/2018.4/vtune_amplifier_2018.4.0.573462/bin64/ctest...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/intel64/ctest...not found Checking for program /ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/bin/ctest...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/automake-1.16.1-hcxryad24zomwxmdcxh4hpbgr467xp3r/bin/ctest...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/m4-1.4.18-h33f3lybhm6walsacsss2tt2g4pkl7ue/bin/ctest...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/autoconf-2.69-56wkkjdyc5qmqx4u5rbqjqbetygrygkl/bin/ctest...not found Checking for program /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/cmake-3.14.4-kaggpee57xa4of7juzpykjw2wod4yxeh/bin/ctest...found Defined make macro "CTEST" to "/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/cmake-3.14.4-kaggpee57xa4of7juzpykjw2wod4yxeh/bin/ctest" Running Executable WITHOUT threads to time it out Executing: /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/cmake-3.14.4-kaggpee57xa4of7juzpykjw2wod4yxeh/bin/cmake --version stdout: cmake version 3.14.4 CMake suite maintained and supported by Kitware (kitware.com/cmake). cmake version found 3.14.4 child config.packages.cmake 0.025171 ================================================================================ TEST alternateConfigureLibrary from config.packages.googletest(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.googletest(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.googletest 0.001400 ================================================================================ TEST alternateConfigureLibrary from config.packages.unittestcpp(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.unittestcpp(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.unittestcpp 0.000834 ================================================================================ TEST alternateConfigureLibrary from config.packages.eigen(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.eigen(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.eigen 0.000825 ================================================================================ TEST alternateConfigureLibrary from config.packages.szlib(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.szlib(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.szlib 0.000815 ================================================================================ TEST alternateConfigureLibrary from config.packages.zlib(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.zlib(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.zlib 0.000803 child config.packages.mathlib 0.000030 ================================================================================ TEST checkDependencies from config.packages.tetgen(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.tetgen(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.tetgen(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:868) TESTING: configureLibrary from config.packages.tetgen(config/BuildSystem/config/package.py:868) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional tetgen Checking for library in User specified root directory TETGEN: ['/home/yim/FreeFem-install-dev/ff-petsc/r/lib/libtet.a'] Contents: ['include', 'lib', 'share'] ================================================================================ TEST check from config.libraries(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [tetrahedralize] in library ['/home/yim/FreeFem-install-dev/ff-petsc/r/lib/libtet.a'] [] Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/config.libraries -O3 -mtune=native -fPIC /tmp/petsc-xt4fpc64/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include // Needed for FILE, NULL class tetgenio { public: enum {FILENAMESIZE = 1024}; enum {INPUTLINESIZE = 1024}; typedef struct { int *vertexlist; int numberofvertices; } polygon; static void init(polygon* p) { p->vertexlist = (int *) NULL; p->numberofvertices = 0; } typedef struct { polygon *polygonlist; int numberofpolygons; double *holelist; int numberofholes; } facet; static void init(facet* f) { f->polygonlist = (polygon *) NULL; f->numberofpolygons = 0; f->holelist = (double *) NULL; f->numberofholes = 0; } typedef struct { int fmark1, fmark2; double transmat[4][4]; int numberofpointpairs; int *pointpairlist; } pbcgroup; public: int firstnumber; int mesh_dim; double *pointlist; double *pointattributelist; double *addpointlist; int *pointmarkerlist; int numberofpoints; int numberofpointattributes; int numberofaddpoints; int *tetrahedronlist; double *tetrahedronattributelist; double *tetrahedronvolumelist; int *neighborlist; int numberoftetrahedra; int numberofcorners; int numberoftetrahedronattributes; facet *facetlist; int *facetmarkerlist; int numberoffacets; double *holelist; int numberofholes; double *regionlist; int numberofregions; double *facetconstraintlist; int numberoffacetconstraints; double *segmentconstraintlist; int numberofsegmentconstraints; double *nodeconstraintlist; int numberofnodeconstraints; pbcgroup *pbcgrouplist; int numberofpbcgroups; int *trifacelist; int *trifacemarkerlist; int numberoftrifaces; int *edgelist; int *edgemarkerlist; int numberofedges; public: void initialize(); void deinitialize(); bool load_node_call(FILE* infile, int markers, char* nodefilename); bool load_node(char* filename); bool load_addnodes(char* filename); bool load_pbc(char* filename); bool load_var(char* filename); bool load_poly(char* filename); bool load_off(char* filename); bool load_ply(char* filename); bool load_stl(char* filename); bool load_medit(char* filename); bool load_plc(char* filename, int object); bool load_tetmesh(char* filename); void save_nodes(char* filename); void save_elements(char* filename); void save_faces(char* filename); void save_edges(char* filename); void save_neighbors(char* filename); void save_poly(char* filename); char *readline(char* string, FILE* infile, int *linenumber); char *findnextfield(char* string); char *readnumberline(char* string, FILE* infile, char* infilename); char *findnextnumber(char* string); tetgenio() {initialize();} ~tetgenio() {deinitialize();} }; void tetrahedralize(char *switches, tetgenio *in, tetgenio *out, tetgenio *addin = NULL, tetgenio *bgmin = NULL); static void _check_tetrahedralize() { tetrahedralize((char *) "", NULL, NULL); } int main() { _check_tetrahedralize();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicpc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -ltet -lquadmath -lstdc++ -ldl Defined "HAVE_LIBTET" to "1" Checking for optional headers [] in User specified root directory TETGEN: ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkInclude from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Found header files [] in ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Checking for headers ['tetgen.h'] in User specified root directory TETGEN: ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkInclude from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['tetgen.h'] in ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Checking include with compiler flags var CXXPPFLAGS ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicpc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers -I/home/yim/FreeFem-install-dev/ff-petsc/r/include -I/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include /tmp/petsc-xt4fpc64/config.headers/conftest.cc Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['tetgen.h'] in ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkVersion from config.packages.tetgen(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.tetgen(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ================================================================================ TEST checkSharedLibrary from config.packages.tetgen(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.tetgen(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.tetgen 0.453198 ================================================================================ TEST alternateConfigureLibrary from config.packages.tchem(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.tchem(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.tchem 0.001266 ================================================================================ TEST alternateConfigureLibrary from config.packages.saws(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.saws(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.saws 0.000811 ================================================================================ TEST alternateConfigureLibrary from config.packages.libpng(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.libpng(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.libpng 0.000813 ================================================================================ TEST alternateConfigureLibrary from config.packages.combblas(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.combblas(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.combblas 0.000940 ================================================================================ TEST checkDependencies from config.packages.metis(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.metis(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.metis(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/metis.py:55) TESTING: configureLibrary from config.packages.metis(config/BuildSystem/config/packages/metis.py:55) ================================================================================== Checking for a functional metis Checking for library in User specified root directory METIS: ['/home/yim/FreeFem-install-dev/ff-petsc/r/lib/libmetis.a'] Contents: ['include', 'lib', 'share'] ================================================================================ TEST check from config.libraries(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [METIS_PartGraphKway] in library ['/home/yim/FreeFem-install-dev/ff-petsc/r/lib/libmetis.a'] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.packages.MPI -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char METIS_PartGraphKway(); static void _check_METIS_PartGraphKway() { METIS_PartGraphKway(); } int main() { _check_METIS_PartGraphKway();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lmetis -lquadmath -lstdc++ -ldl Defined "HAVE_LIBMETIS" to "1" Checking for optional headers [] in User specified root directory METIS: ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkInclude from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Found header files [] in ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Checking for headers ['metis.h'] in User specified root directory METIS: ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkInclude from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['metis.h'] in ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Checking include with compiler flags var CPPFLAGS ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/home/yim/FreeFem-install-dev/ff-petsc/r/include -I/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['metis.h'] in ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] All intermediate test results are stored in /tmp/petsc-xt4fpc64/config.packages.metis Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.packages.metis/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -fPIC -O3 -mtune=native -I/home/yim/FreeFem-install-dev/ff-petsc/r/include /tmp/petsc-xt4fpc64/config.packages.metis/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-xt4fpc64/config.packages.metis/conftest.c(8): warning #14: extra text after expected end of preprocessing directive #endif; ^ Source: #include "confdefs.h" #include "conffix.h" #include "metis.h" int main() { #if (IDXTYPEWIDTH != 32) #error incompatible IDXTYPEWIDTH #endif; return 0; } ================================================================================ TEST checkVersion from config.packages.metis(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.metis(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "metis.h" ;petscpkgver(METIS_VER_MAJOR.METIS_VER_MINOR.METIS_VER_SUBMINOR); Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/home/yim/FreeFem-install-dev/ff-petsc/r/include /tmp/petsc-xt4fpc64/config.packages.metis/conftest.c For metis need <= 5.1.0 <= ================================================================================ TEST checkSharedLibrary from config.packages.metis(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.metis(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.metis 0.562743 ================================================================================ TEST alternateConfigureLibrary from config.packages.pragmatic(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.pragmatic(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.pragmatic 0.001268 ================================================================================ TEST checkDependencies from config.packages.parmetis(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.parmetis(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.parmetis(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/parmetis.py:41) TESTING: configureLibrary from config.packages.parmetis(config/BuildSystem/config/packages/parmetis.py:41) ================================================================================== Checking for a functional parmetis Checking for library in User specified root directory PARMETIS: ['/home/yim/FreeFem-install-dev/ff-petsc/r/lib/libparmetis.a'] Contents: ['include', 'lib', 'share'] ================================================================================ TEST check from config.libraries(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [ParMETIS_V3_PartKway] in library ['/home/yim/FreeFem-install-dev/ff-petsc/r/lib/libparmetis.a'] ['/home/yim/FreeFem-install-dev/ff-petsc/r/lib/libmetis.a'] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.libraries -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ParMETIS_V3_PartKway(); static void _check_ParMETIS_V3_PartKway() { ParMETIS_V3_PartKway(); } int main() { _check_ParMETIS_V3_PartKway();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lparmetis -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lmetis -lquadmath -lstdc++ -ldl Defined "HAVE_LIBPARMETIS" to "1" Checking for optional headers [] in User specified root directory PARMETIS: ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkInclude from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Found header files [] in ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Checking for headers ['parmetis.h'] in User specified root directory PARMETIS: ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkInclude from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['parmetis.h'] in ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Checking include with compiler flags var CPPFLAGS ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include', '/home/yim/FreeFem-install-dev/ff-petsc/r/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.headers -I/home/yim/FreeFem-install-dev/ff-petsc/r/include -I/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include -I/home/yim/FreeFem-install-dev/ff-petsc/r/include /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['parmetis.h'] in ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Checking for functions [ParMETIS_ComputeVertexSeparator] in library ['/home/yim/FreeFem-install-dev/ff-petsc/r/lib/libparmetis.a'] ['/home/yim/FreeFem-install-dev/ff-petsc/r/lib/libmetis.a'] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.libraries -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ParMETIS_ComputeVertexSeparator(); static void _check_ParMETIS_ComputeVertexSeparator() { ParMETIS_ComputeVertexSeparator(); } int main() { _check_ParMETIS_ComputeVertexSeparator();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lparmetis -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lmetis -lquadmath -lstdc++ -ldl Defined "HAVE_LIBPARMETIS" to "1" ================================================================================ TEST checkVersion from config.packages.parmetis(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.parmetis(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version All intermediate test results are stored in /tmp/petsc-xt4fpc64/config.packages.parmetis Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "parmetis.h" ;petscpkgver(PARMETIS_MAJOR_VERSION.PARMETIS_MINOR_VERSION.PARMETIS_SUBMINOR_VERSION); Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.packages.parmetis -I/home/yim/FreeFem-install-dev/ff-petsc/r/include /tmp/petsc-xt4fpc64/config.packages.parmetis/conftest.c For parmetis need <= 4.0.3 <= ================================================================================ TEST checkSharedLibrary from config.packages.parmetis(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.parmetis(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.parmetis 0.838565 ================================================================================ TEST alternateConfigureLibrary from config.packages.Chaco(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.Chaco(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.Chaco 0.001316 Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ TEST alternateConfigureLibrary from config.packages.hdf5(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.hdf5(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.hdf5 0.005991 ================================================================================ TEST alternateConfigureLibrary from config.packages.med(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.med(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.med 0.000847 ================================================================================ TEST alternateConfigureLibrary from config.packages.cgns(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.cgns(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.cgns 0.000727 ================================================================================ TEST alternateConfigureLibrary from config.packages.ascem-io(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.ascem-io(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.ascem-io 0.000840 ================================================================================ TEST alternateConfigureLibrary from config.packages.pflotran(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.pflotran(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.pflotran 0.000827 ================================================================================ TEST alternateConfigureLibrary from config.packages.alquimia(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.alquimia(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.alquimia 0.000824 ================================================================================ TEST alternateConfigureLibrary from config.packages.SAMRAI(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.SAMRAI(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.SAMRAI 0.000816 ================================================================================ TEST alternateConfigureLibrary from config.packages.ADIOS2(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.ADIOS2(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.ADIOS2 0.000814 child config.packages.flibs 0.000034 ================================================================================ TEST alternateConfigureLibrary from config.packages.pnetcdf(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.pnetcdf(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.pnetcdf 0.000815 ================================================================================ TEST alternateConfigureLibrary from config.packages.netcdf(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.netcdf(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.netcdf 0.000813 ================================================================================ TEST alternateConfigureLibrary from config.packages.exodusii(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.exodusii(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.exodusii 0.000829 ================================================================================ TEST alternateConfigureLibrary from config.packages.fblaslapack(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.fblaslapack(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.fblaslapack 0.000772 ================================================================================ TEST alternateConfigureLibrary from config.packages.X(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.X(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.X 0.000715 ================================================================================ TEST alternateConfigureLibrary from config.packages.Triangle(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.Triangle(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.Triangle 0.000823 ================================================================================ TEST alternateConfigureLibrary from config.packages.GLVis(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.GLVis(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.GLVis 0.000839 ================================================================================ TEST alternateConfigureLibrary from config.packages.hwloc(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.hwloc(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.hwloc 0.000828 ================================================================================ TEST checkDependencies from config.packages.pthread(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.pthread(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.pthread(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/pthread.py:20) TESTING: configureLibrary from config.packages.pthread(config/BuildSystem/config/packages/pthread.py:20) Checks for pthread_barrier_t, cpu_set_t, and sys/sysctl.h ================================================================================== Checking for a functional pthread Checking for library in Compiler specific search PTHREAD: [] ================================================================================ TEST check from config.libraries(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [pthread_create] in library [] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.libraries -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pthread_create(); static void _check_pthread_create() { pthread_create(); } int main() { _check_pthread_create();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Checking for optional headers [] in Compiler specific search PTHREAD: ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkInclude from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Found header files [] in ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Checking for headers ['pthread.h'] in Compiler specific search PTHREAD: ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkInclude from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['pthread.h'] in ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Checking include with compiler flags var CPPFLAGS ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.parmetis -I/tmp/petsc-xt4fpc64/config.headers -I/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['pthread.h'] in ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] All intermediate test results are stored in /tmp/petsc-xt4fpc64/config.packages.pthread Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.packages.pthread/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.packages.pthread -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.pthread/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { pthread_barrier_t *a; ; return 0; } Defined "HAVE_PTHREAD_BARRIER_T" to "1" Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.packages.pthread/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.packages.pthread -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.pthread/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { cpu_set_t *a; ; return 0; } Defined "HAVE_SCHED_CPU_SET_T" to "1" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.parmetis -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.packages.pthread /tmp/petsc-xt4fpc64/config.packages.pthread/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SYSCTL_H" to "1" ================================================================================ TEST checkVersion from config.packages.pthread(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.pthread(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ================================================================================ TEST checkSharedLibrary from config.packages.pthread(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.pthread(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.pthread 0.715366 ================================================================================ TEST checkDependencies from config.packages.PTScotch(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.PTScotch(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.PTScotch(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:868) TESTING: configureLibrary from config.packages.PTScotch(config/BuildSystem/config/package.py:868) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional PTScotch Checking for library in User specified root directory PTSCOTCH: ['/home/yim/FreeFem-install-dev/ff-petsc/r/lib/libptesmumps.a', 'libptscotchparmetis.a', 'libptscotch.a', 'libptscotcherr.a', 'libesmumps.a', 'libscotch.a', 'libscotcherr.a'] Contents: ['include', 'lib', 'share'] ================================================================================ TEST check from config.libraries(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names ================================================================================ TEST check from config.libraries(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [SCOTCH_archBuild] in library ['/home/yim/FreeFem-install-dev/ff-petsc/r/lib/libptesmumps.a', 'libptscotchparmetis.a', 'libptscotch.a', 'libptscotcherr.a', 'libesmumps.a', 'libscotch.a', 'libscotcherr.a'] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.packages.pthread -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char SCOTCH_archBuild(); static void _check_SCOTCH_archBuild() { SCOTCH_archBuild(); } int main() { _check_SCOTCH_archBuild();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lptesmumps -lptscotchparmetis -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr -lquadmath -lstdc++ -ldl Defined "HAVE_LIBPTESMUMPS" to "1" Defined "HAVE_LIBPTSCOTCHPARMETIS" to "1" Defined "HAVE_LIBPTSCOTCH" to "1" Defined "HAVE_LIBPTSCOTCHERR" to "1" Defined "HAVE_LIBESMUMPS" to "1" Defined "HAVE_LIBSCOTCH" to "1" Defined "HAVE_LIBSCOTCHERR" to "1" Checking for functions [SCOTCH_ParMETIS_V3_NodeND] in library ['/home/yim/FreeFem-install-dev/ff-petsc/r/lib/libptesmumps.a', 'libptscotchparmetis.a', 'libptscotch.a', 'libptscotcherr.a', 'libesmumps.a', 'libscotch.a', 'libscotcherr.a'] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.packages.pthread -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char SCOTCH_ParMETIS_V3_NodeND(); static void _check_SCOTCH_ParMETIS_V3_NodeND() { SCOTCH_ParMETIS_V3_NodeND(); } int main() { _check_SCOTCH_ParMETIS_V3_NodeND();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lptesmumps -lptscotchparmetis -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr -lquadmath -lstdc++ -ldl Defined "HAVE_SCOTCH_PARMETIS_V3_NODEND" to "1" Checking for optional headers [] in User specified root directory PTSCOTCH: ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkInclude from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Found header files [] in ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Checking for headers ['ptscotch.h'] in User specified root directory PTSCOTCH: ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkInclude from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['ptscotch.h'] in ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Checking include with compiler flags var CPPFLAGS ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.parmetis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.headers -I/home/yim/FreeFem-install-dev/ff-petsc/r/include -I/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['ptscotch.h'] in ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkVersion from config.packages.PTScotch(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.PTScotch(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version All intermediate test results are stored in /tmp/petsc-xt4fpc64/config.packages.PTScotch Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "ptscotch.h" ;petscpkgver(SCOTCH_VERSION.SCOTCH_RELEASE.SCOTCH_PATCHLEVEL); Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.parmetis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.packages.PTScotch -I/home/yim/FreeFem-install-dev/ff-petsc/r/include /tmp/petsc-xt4fpc64/config.packages.PTScotch/conftest.c For ptscotch need <= 6.0.9 <= ================================================================================ TEST checkSharedLibrary from config.packages.PTScotch(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.PTScotch(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.PTScotch 0.804675 ================================================================================ TEST alternateConfigureLibrary from config.packages.Zoltan(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.Zoltan(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.Zoltan 0.001321 ================================================================================ TEST alternateConfigureLibrary from config.packages.ADIOS(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.ADIOS(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.ADIOS 0.000833 ================================================================================ TEST alternateConfigureLibrary from config.packages.openmp(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.openmp(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.openmp 0.000717 ================================================================================ TEST alternateConfigureLibrary from config.packages.viennacl(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.viennacl(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.viennacl 0.000826 ================================================================================ TEST alternateConfigureLibrary from config.packages.ColPack(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.ColPack(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.ColPack 0.000828 ================================================================================ TEST alternateConfigureLibrary from config.packages.openblas(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.openblas(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.openblas 0.000826 ================================================================================ TEST alternateConfigureLibrary from config.packages.blis(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.blis(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.blis 0.000830 ================================================================================ TEST alternateConfigureLibrary from config.packages.f2cblaslapack(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.f2cblaslapack 0.000768 ================================================================================ TEST checkDependencies from config.packages.BlasLapack(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.BlasLapack(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.BlasLapack(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/BlasLapack.py:446) TESTING: configureLibrary from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:446) Looking for BLAS/LAPACK in user specified directory: /home/yim/FreeFem-install-dev/ff-petsc/r Files and directories in that directory: ['include', 'lib', 'share'] Files and directories in that directory: ['include', 'lib', 'share'] ================================================================================ Checking for BLAS and LAPACK in User specified MATLAB [ILP64] MKL Linux lib dir ================================================================================ TEST checkLib from config.packages.BlasLapack(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/BlasLapack.py:106) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:106) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling underscore on BLAS/LAPACK Checking for functions [ddot_] in library ['/home/yim/FreeFem-install-dev/ff-petsc/r/bin/glnxa64/mkl.so', '/home/yim/FreeFem-install-dev/ff-petsc/r/sys/os/glnxa64/libiomp5.so', 'pthread'] ['-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64', '-lstdc++', '-ldl', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-lmpifort', '-lmpi', '-lmpigi', '-lrt', '-lpthread', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt', '-Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib', '-lifport', '-lifcoremt_pic', '-limf', '-lsvml', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s'] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.packages.pthread -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o /home/yim/FreeFem-install-dev/ff-petsc/r/bin/glnxa64/mkl.so -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/sys/os/glnxa64 -L/home/yim/FreeFem-install-dev/ff-petsc/r/sys/os/glnxa64 -liomp5 -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -lstdc++ -ldl -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -lmpifort -lmpi -lmpigi -lrt -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lgcc_s -lirc_s -lquadmath -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: icc: error #10236: File not found: '/home/yim/FreeFem-install-dev/ff-petsc/r/bin/glnxa64/mkl.so' Checking for no name mangling on BLAS/LAPACK Checking for functions [ddot] in library ['/home/yim/FreeFem-install-dev/ff-petsc/r/bin/glnxa64/mkl.so', '/home/yim/FreeFem-install-dev/ff-petsc/r/sys/os/glnxa64/libiomp5.so', 'pthread'] ['-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64', '-lstdc++', '-ldl', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-lmpifort', '-lmpi', '-lmpigi', '-lrt', '-lpthread', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt', '-Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib', '-lifport', '-lifcoremt_pic', '-limf', '-lsvml', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s'] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.packages.pthread -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o /home/yim/FreeFem-install-dev/ff-petsc/r/bin/glnxa64/mkl.so -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/sys/os/glnxa64 -L/home/yim/FreeFem-install-dev/ff-petsc/r/sys/os/glnxa64 -liomp5 -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -lstdc++ -ldl -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -lmpifort -lmpi -lmpigi -lrt -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lgcc_s -lirc_s -lquadmath -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: icc: error #10236: File not found: '/home/yim/FreeFem-install-dev/ff-petsc/r/bin/glnxa64/mkl.so' Unknown name mangling in BLAS/LAPACK ================================================================================ Checking for BLAS and LAPACK in User specified MATLAB [ILP64] MKL MacOS lib dir ================================================================================ TEST checkLib from config.packages.BlasLapack(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/BlasLapack.py:106) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:106) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling underscore on BLAS/LAPACK Checking for functions [ddot_] in library ['/home/yim/FreeFem-install-dev/ff-petsc/r/bin/maci64/mkl.dylib', '/home/yim/FreeFem-install-dev/ff-petsc/r/sys/os/maci64/libiomp5.dylib', 'pthread'] ['-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64', '-lstdc++', '-ldl', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-lmpifort', '-lmpi', '-lmpigi', '-lrt', '-lpthread', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt', '-Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib', '-lifport', '-lifcoremt_pic', '-limf', '-lsvml', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s'] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.packages.pthread -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/bin/maci64 -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o /home/yim/FreeFem-install-dev/ff-petsc/r/bin/maci64/mkl.dylib -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/sys/os/maci64 -L/home/yim/FreeFem-install-dev/ff-petsc/r/sys/os/maci64 -liomp5 -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -lstdc++ -ldl -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -lmpifort -lmpi -lmpigi -lrt -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lgcc_s -lirc_s -lquadmath -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: icc: error #10236: File not found: '/home/yim/FreeFem-install-dev/ff-petsc/r/bin/maci64/mkl.dylib' Checking for no name mangling on BLAS/LAPACK Checking for functions [ddot] in library ['/home/yim/FreeFem-install-dev/ff-petsc/r/bin/maci64/mkl.dylib', '/home/yim/FreeFem-install-dev/ff-petsc/r/sys/os/maci64/libiomp5.dylib', 'pthread'] ['-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64', '-lstdc++', '-ldl', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-lmpifort', '-lmpi', '-lmpigi', '-lrt', '-lpthread', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt', '-Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib', '-lifport', '-lifcoremt_pic', '-limf', '-lsvml', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s'] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.packages.pthread -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/bin/maci64 -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o /home/yim/FreeFem-install-dev/ff-petsc/r/bin/maci64/mkl.dylib -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/sys/os/maci64 -L/home/yim/FreeFem-install-dev/ff-petsc/r/sys/os/maci64 -liomp5 -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -lstdc++ -ldl -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -lmpifort -lmpi -lmpigi -lrt -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lgcc_s -lirc_s -lquadmath -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: icc: error #10236: File not found: '/home/yim/FreeFem-install-dev/ff-petsc/r/bin/maci64/mkl.dylib' Unknown name mangling in BLAS/LAPACK ================================================================================ Checking for BLAS and LAPACK in User specified MKL11/12 and later ================================================================================ TEST checkLib from config.packages.BlasLapack(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/BlasLapack.py:106) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:106) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling underscore on BLAS/LAPACK Checking for functions [ddot_] in library ['/home/yim/FreeFem-install-dev/ff-petsc/r/libmkl_intel_lp64.a', 'mkl_core', 'mkl_sequential', 'pthread'] ['-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64', '-lstdc++', '-ldl', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-lmpifort', '-lmpi', '-lmpigi', '-lrt', '-lpthread', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt', '-Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib', '-lifport', '-lifcoremt_pic', '-limf', '-lsvml', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s'] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.packages.pthread -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r -L/home/yim/FreeFem-install-dev/ff-petsc/r -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -lstdc++ -ldl -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -lmpifort -lmpi -lmpigi -lrt -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lgcc_s -lirc_s -lquadmath -lstdc++ -ldl Defined "HAVE_LIBMKL_INTEL_LP64" to "1" Defined "HAVE_LIBMKL_CORE" to "1" Defined "HAVE_LIBMKL_SEQUENTIAL" to "1" Defined "HAVE_LIBPTHREAD" to "1" Checking for functions [dgetrs_] in library ['/home/yim/FreeFem-install-dev/ff-petsc/r/libmkl_intel_lp64.a', 'mkl_core', 'mkl_sequential', 'pthread'] ['-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64', '-lstdc++', '-ldl', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-lmpifort', '-lmpi', '-lmpigi', '-lrt', '-lpthread', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt', '-Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib', '-lifport', '-lifcoremt_pic', '-limf', '-lsvml', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s'] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.packages.pthread -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); static void _check_dgetrs_() { dgetrs_(); } int main() { _check_dgetrs_();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r -L/home/yim/FreeFem-install-dev/ff-petsc/r -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -lstdc++ -ldl -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -lmpifort -lmpi -lmpigi -lrt -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lgcc_s -lirc_s -lquadmath -lstdc++ -ldl Defined "HAVE_LIBMKL_INTEL_LP64" to "1" Defined "HAVE_LIBMKL_CORE" to "1" Defined "HAVE_LIBMKL_SEQUENTIAL" to "1" Defined "HAVE_LIBPTHREAD" to "1" Checking for functions [dgeev_] in library ['/home/yim/FreeFem-install-dev/ff-petsc/r/libmkl_intel_lp64.a', 'mkl_core', 'mkl_sequential', 'pthread'] ['-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64', '-lstdc++', '-ldl', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-lmpifort', '-lmpi', '-lmpigi', '-lrt', '-lpthread', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt', '-Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib', '-lifport', '-lifcoremt_pic', '-limf', '-lsvml', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s'] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.packages.pthread -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); static void _check_dgeev_() { dgeev_(); } int main() { _check_dgeev_();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r -L/home/yim/FreeFem-install-dev/ff-petsc/r -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -lstdc++ -ldl -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -lmpifort -lmpi -lmpigi -lrt -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lgcc_s -lirc_s -lquadmath -lstdc++ -ldl Defined "HAVE_LIBMKL_INTEL_LP64" to "1" Defined "HAVE_LIBMKL_CORE" to "1" Defined "HAVE_LIBMKL_SEQUENTIAL" to "1" Defined "HAVE_LIBPTHREAD" to "1" Found Fortran mangling on BLAS/LAPACK which is underscore Defined "BLASLAPACK_UNDERSCORE" to "1" ================================================================================ TEST checkMKL from config.packages.BlasLapack(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/BlasLapack.py:517) TESTING: checkMKL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:517) Check for Intel MKL library Defined "HAVE_MKL" to "1" All intermediate test results are stored in /tmp/petsc-xt4fpc64/config.packages.BlasLapack Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.packages.BlasLapack/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.packages.BlasLapack/conftest.c Possible ERROR while running compiler: exit code 4 stderr: /tmp/petsc-xt4fpc64/config.packages.BlasLapack/conftest.c(3): catastrophic error: cannot open source file "mkl_spblas.h" #include "mkl_spblas.h" ^ compilation aborted for /tmp/petsc-xt4fpc64/config.packages.BlasLapack/conftest.c (code 4) Source: #include "confdefs.h" #include "conffix.h" #include "mkl_spblas.h" int main() { ; return 0; } MKL include path not automatically picked up by compiler. Trying to find mkl_spblas.h... ================================================================================ TEST checkInclude from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mkl_spblas.h'] in ['/home/yim/FreeFem-install-dev/ff-petsc/r/include'] Checking include with compiler flags var CPPFLAGS ['/home/yim/FreeFem-install-dev/ff-petsc/r/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.parmetis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.PTScotch -I/tmp/petsc-xt4fpc64/config.headers -I/home/yim/FreeFem-install-dev/ff-petsc/r/include /tmp/petsc-xt4fpc64/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/conffix.h" 1 # 3 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 stderr: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "mkl_spblas.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "mkl_spblas.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "mkl_spblas.h" #include ^: Unable to find MKL include directory! Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "mkl_version.h" ;petscpkgver(INTEL_MKL_VERSION); Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.parmetis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.PTScotch -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack /tmp/petsc-xt4fpc64/config.packages.BlasLapack/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-xt4fpc64/config.packages.BlasLapack/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 1 "/tmp/petsc-xt4fpc64/config.packages.BlasLapack/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.packages.BlasLapack/confdefs.h" 1 # 2 "/tmp/petsc-xt4fpc64/config.packages.BlasLapack/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.packages.BlasLapack/conffix.h" 1 # 3 "/tmp/petsc-xt4fpc64/config.packages.BlasLapack/conftest.c" 2 ;petscpkgver(INTEL_MKL_VERSION); stderr: /tmp/petsc-xt4fpc64/config.packages.BlasLapack/conftest.c(3): error #2379: cannot open source file "mkl_version.h" #include "mkl_version.h" ^ Source: #include "confdefs.h" #include "conffix.h" #include "mkl_version.h" ;petscpkgver(INTEL_MKL_VERSION); For blaslapack unable to convert version information (INTEL_MKL_VERSION) to standard form, skipping version check Checking for functions [mkl_set_num_threads] in library ['/home/yim/FreeFem-install-dev/ff-petsc/r/libmkl_intel_lp64.a', 'mkl_core', 'mkl_sequential', 'pthread', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64', '-lstdc++', '-ldl', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-lmpifort', '-lmpi', '-lmpigi', '-lrt', '-lpthread', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt', '-Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib', '-lifport', '-lifcoremt_pic', '-limf', '-lsvml', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s'] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.packages.pthread -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char mkl_set_num_threads(); static void _check_mkl_set_num_threads() { mkl_set_num_threads(); } int main() { _check_mkl_set_num_threads();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r -L/home/yim/FreeFem-install-dev/ff-petsc/r -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -lstdc++ -ldl -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -lmpifort -lmpi -lmpigi -lrt -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lgcc_s -lirc_s -lquadmath -lstdc++ -ldl Defined "HAVE_LIBMKL_INTEL_LP64" to "1" Defined "HAVE_LIBMKL_CORE" to "1" Defined "HAVE_LIBMKL_SEQUENTIAL" to "1" Defined "HAVE_LIBPTHREAD" to "1" Defined "HAVE_LIBSTDC__" to "1" Defined "HAVE_LIBDL" to "1" Defined "HAVE_LIBMPIFORT" to "1" Defined "HAVE_LIBMPI" to "1" Defined "HAVE_LIBMPIGI" to "1" Defined "HAVE_LIBRT" to "1" Defined "HAVE_LIBPTHREAD" to "1" Defined "HAVE_LIBIFPORT" to "1" Defined "HAVE_LIBIFCOREMT_PIC" to "1" Defined "HAVE_LIBIMF" to "1" Defined "HAVE_LIBSVML" to "1" Defined "HAVE_LIBM" to "1" Defined "HAVE_LIBIPGO" to "1" Defined "HAVE_LIBIRC" to "1" Defined "HAVE_LIBGCC_S" to "1" Defined "HAVE_LIBIRC_S" to "1" ================================================================================ TEST checklsame from config.packages.BlasLapack(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/BlasLapack.py:604) TESTING: checklsame from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:604) Do the BLAS/LAPACK libraries have a valid lsame() function with correct binding. Checking for functions [lsame_] in library ['/home/yim/FreeFem-install-dev/ff-petsc/r/libmkl_intel_lp64.a', 'mkl_core', 'mkl_sequential', 'pthread', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64', '-lstdc++', '-ldl', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-lmpifort', '-lmpi', '-lmpigi', '-lrt', '-lpthread', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt', '-Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib', '-lifport', '-lifcoremt_pic', '-limf', '-lsvml', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s'] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.libraries -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char lsame_(); static void _check_lsame_() { lsame_(); } int main() { _check_lsame_();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r -L/home/yim/FreeFem-install-dev/ff-petsc/r -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -lstdc++ -ldl -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -lmpifort -lmpi -lmpigi -lrt -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lgcc_s -lirc_s -lquadmath -lstdc++ -ldl Defined "HAVE_LIBMKL_INTEL_LP64" to "1" Defined "HAVE_LIBMKL_CORE" to "1" Defined "HAVE_LIBMKL_SEQUENTIAL" to "1" Defined "HAVE_LIBPTHREAD" to "1" Defined "HAVE_LIBSTDC__" to "1" Defined "HAVE_LIBDL" to "1" Defined "HAVE_LIBMPIFORT" to "1" Defined "HAVE_LIBMPI" to "1" Defined "HAVE_LIBMPIGI" to "1" Defined "HAVE_LIBRT" to "1" Defined "HAVE_LIBPTHREAD" to "1" Defined "HAVE_LIBIFPORT" to "1" Defined "HAVE_LIBIFCOREMT_PIC" to "1" Defined "HAVE_LIBIMF" to "1" Defined "HAVE_LIBSVML" to "1" Defined "HAVE_LIBM" to "1" Defined "HAVE_LIBIPGO" to "1" Defined "HAVE_LIBIRC" to "1" Defined "HAVE_LIBGCC_S" to "1" Defined "HAVE_LIBIRC_S" to "1" Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" char *dgeev_(void); char* testroutine(void){return dgeev_(); }Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" char *dgeev_(void); char* testroutine(void){return dgeev_(); }Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.setCompilers/libconftest.so -shared -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.setCompilers/conftest.o -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r -L/home/yim/FreeFem-install-dev/ff-petsc/r -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -lstdc++ -ldl -lmpifort -lmpi -lmpigi -lrt -lpthread -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lgcc_s -lirc_s -lquadmath -lstdc++ -ldl ================================================================================ TEST checkRuntimeIssues from config.packages.BlasLapack(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/BlasLapack.py:663) TESTING: checkRuntimeIssues from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:663) Determines if BLAS/LAPACK routines use 32 or 64 bit integers 32 bit blas indices based on the BLAS/LAPACK library being used ================================================================================ TEST checkVersion from config.packages.BlasLapack(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.BlasLapack(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "mkl_version.h" ;petscpkgver(INTEL_MKL_VERSION); Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.parmetis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.PTScotch -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack /tmp/petsc-xt4fpc64/config.packages.BlasLapack/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-xt4fpc64/config.packages.BlasLapack/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 1 "/tmp/petsc-xt4fpc64/config.packages.BlasLapack/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.packages.BlasLapack/confdefs.h" 1 # 2 "/tmp/petsc-xt4fpc64/config.packages.BlasLapack/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.packages.BlasLapack/conffix.h" 1 # 3 "/tmp/petsc-xt4fpc64/config.packages.BlasLapack/conftest.c" 2 ;petscpkgver(INTEL_MKL_VERSION); stderr: /tmp/petsc-xt4fpc64/config.packages.BlasLapack/conftest.c(3): error #2379: cannot open source file "mkl_version.h" #include "mkl_version.h" ^ Source: #include "confdefs.h" #include "conffix.h" #include "mkl_version.h" ;petscpkgver(INTEL_MKL_VERSION); For blaslapack unable to convert version information (INTEL_MKL_VERSION) to standard form, skipping version check ================================================================================ TEST checkSharedLibrary from config.packages.BlasLapack(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.BlasLapack(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.BlasLapack 12.123709 ================================================================================ TEST alternateConfigureLibrary from config.packages.sundials(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.sundials(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.sundials 0.001397 ================================================================================ TEST alternateConfigureLibrary from config.packages.spai(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.spai(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.spai 0.000945 ================================================================================ TEST alternateConfigureLibrary from config.packages.pARMS(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.pARMS(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.pARMS 0.000823 ================================================================================ TEST alternateConfigureLibrary from config.packages.p4est(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.p4est(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.p4est 0.000809 ================================================================================ TEST checkDependencies from config.packages.mkl_sparse_optimize(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.mkl_sparse_optimize(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/mkl_sparse_optimize.py:48) TESTING: configureLibrary from config.packages.mkl_sparse_optimize(config/BuildSystem/config/packages/mkl_sparse_optimize.py:48) ================================================================================== Checking for a functional mkl_sparse_optimize Checking for library in Compiler specific search MKL_SPARSE_OPTIMIZE: [] ================================================================================ TEST check from config.libraries(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [mkl_sparse_optimize mkl_sparse_s_create_bsr] in library [] ['/home/yim/FreeFem-install-dev/ff-petsc/r/libmkl_intel_lp64.a', 'mkl_core', 'mkl_sequential', 'pthread', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64', '-lstdc++', '-ldl', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-lmpifort', '-lmpi', '-lmpigi', '-lrt', '-lpthread', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt', '-Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib', '-lifport', '-lifcoremt_pic', '-limf', '-lsvml', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s'] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char mkl_sparse_optimize(); static void _check_mkl_sparse_optimize() { mkl_sparse_optimize(); } char mkl_sparse_s_create_bsr(); static void _check_mkl_sparse_s_create_bsr() { mkl_sparse_s_create_bsr(); } int main() { _check_mkl_sparse_optimize(); _check_mkl_sparse_s_create_bsr();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r -L/home/yim/FreeFem-install-dev/ff-petsc/r -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -lstdc++ -ldl -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -lmpifort -lmpi -lmpigi -lrt -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lgcc_s -lirc_s -lquadmath -lstdc++ -ldl Checking for optional headers [] in Compiler specific search MKL_SPARSE_OPTIMIZE: ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkInclude from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Found header files [] in ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Checking for headers ['mkl.h', 'mkl_spblas.h'] in Compiler specific search MKL_SPARSE_OPTIMIZE: ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkInclude from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mkl.h', 'mkl_spblas.h'] in ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Checking include with compiler flags var CPPFLAGS ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.parmetis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.PTScotch -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include /tmp/petsc-xt4fpc64/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/conffix.h" 1 # 3 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 stderr: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "mkl.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "mkl.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "mkl.h" #include ^: ================================================================================ TEST checkVersion from config.packages.mkl_sparse_optimize(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ================================================================================ TEST checkSharedLibrary from config.packages.mkl_sparse_optimize(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.mkl_sparse_optimize 1.133581 ================================================================================ TEST checkDependencies from config.packages.mkl_sparse(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.mkl_sparse(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.mkl_sparse(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/mkl_sparse.py:21) TESTING: configureLibrary from config.packages.mkl_sparse(config/BuildSystem/config/packages/mkl_sparse.py:21) ================================================================================== Checking for a functional mkl_sparse Checking for library in Compiler specific search MKL_SPARSE: [] ================================================================================ TEST check from config.libraries(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [mkl_dcsrmv] in library [] ['/home/yim/FreeFem-install-dev/ff-petsc/r/libmkl_intel_lp64.a', 'mkl_core', 'mkl_sequential', 'pthread', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64', '-lstdc++', '-ldl', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-lmpifort', '-lmpi', '-lmpigi', '-lrt', '-lpthread', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt', '-Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib', '-lifport', '-lifcoremt_pic', '-limf', '-lsvml', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s'] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char mkl_dcsrmv(); static void _check_mkl_dcsrmv() { mkl_dcsrmv(); } int main() { _check_mkl_dcsrmv();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r -L/home/yim/FreeFem-install-dev/ff-petsc/r -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -lstdc++ -ldl -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -lmpifort -lmpi -lmpigi -lrt -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lgcc_s -lirc_s -lquadmath -lstdc++ -ldl Checking for optional headers [] in Compiler specific search MKL_SPARSE: ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkInclude from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Found header files [] in ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Checking for headers ['mkl.h', 'mkl_spblas.h'] in Compiler specific search MKL_SPARSE: ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkInclude from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mkl.h', 'mkl_spblas.h'] in ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Checking include with compiler flags var CPPFLAGS ['/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.parmetis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.PTScotch -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include /tmp/petsc-xt4fpc64/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" # 1 "/usr/include/stdc-predef.h" 1 # 1 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 # 1 "/tmp/petsc-xt4fpc64/config.headers/conffix.h" 1 # 3 "/tmp/petsc-xt4fpc64/config.headers/conftest.c" 2 stderr: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "mkl.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "mkl.h" #include ^ : Preprocess stderr after filtering: /tmp/petsc-xt4fpc64/config.headers/conftest.c(3): error #2379: cannot open source file "mkl.h" #include ^: ================================================================================ TEST checkVersion from config.packages.mkl_sparse(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.mkl_sparse(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ================================================================================ TEST checkSharedLibrary from config.packages.mkl_sparse(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.mkl_sparse(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.mkl_sparse 1.146296 ================================================================================ TEST alternateConfigureLibrary from config.packages.mkl_cpardiso(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.mkl_cpardiso(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.mkl_cpardiso 0.000874 ================================================================================ TEST checkDependencies from config.packages.hpddm(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.hpddm(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.hpddm(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:868) TESTING: configureLibrary from config.packages.hpddm(config/BuildSystem/config/package.py:868) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional hpddm Looking for HPDDM at git.hpddm, hg.hpddm or a directory starting with ['hpddm'] Could not locate an existing copy of HPDDM: ['git.slepc'] Downloading hpddm =============================================================================== Trying to download git://https://github.com/hpddm/hpddm for HPDDM =============================================================================== Running Executable WITHOUT threads to time it out Executing: git clone https://github.com/hpddm/hpddm /home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/fc/externalpackages/git.hpddm stdout: Cloning into '/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/fc/externalpackages/git.hpddm'... Looking for HPDDM at git.hpddm, hg.hpddm or a directory starting with ['hpddm'] Found a copy of HPDDM in git.hpddm Running Executable WITHOUT threads to time it out Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Running Executable WITHOUT threads to time it out Executing: ['git', 'cat-file', '-e', 'ce6ce80^{commit}'] Running Executable WITHOUT threads to time it out Executing: ['git', 'rev-parse', 'ce6ce80'] stdout: ce6ce80b62e9bc71efedf8b9cb6ffb00dfd6e44e Running Executable WITHOUT threads to time it out Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Running Executable WITHOUT threads to time it out Executing: ['git', 'clean', '-f', '-d', '-x'] Running Executable WITHOUT threads to time it out Executing: ['git', 'checkout', '-f', 'ce6ce80b62e9bc71efedf8b9cb6ffb00dfd6e44e'] Defined make macro "HPDDM" to "yes" =============================================================================== Copying HPDDM; this may take several seconds =============================================================================== Running Executable WITHOUT threads to time it out Executing: mkdir -p /home/yim/FreeFem-install-dev/ff-petsc/c/include && cp /home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/fc/externalpackages/git.hpddm/include/* /home/yim/FreeFem-install-dev/ff-petsc/c/include All intermediate test results are stored in /tmp/petsc-xt4fpc64/config.packages.hpddm Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "HPDDM_define.hpp" ;petscpkgver(HPDDM_VERSION); Running Executable WITHOUT threads to time it out Executing: mpiicpc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.packages.hpddm -I/home/yim/FreeFem-install-dev/ff-petsc/c/include -I/home/yim/FreeFem-install-dev/ff-petsc/c/include /tmp/petsc-xt4fpc64/config.packages.hpddm/conftest.cc For hpddm need 2.0.3 <= 2.0.6 <= Defined make rule "hpddmcopy" with dependencies "" and code ['@echo "*** Copying HPDDM ***"', '@${RM} -f ${PETSC_ARCH}/lib/petsc/conf/hpddm.errorflg', '@ mkdir -p /home/yim/FreeFem-install-dev/ff-petsc/c/include && cp /home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/fc/externalpackages/git.hpddm/include/* /home/yim/FreeFem-install-dev/ff-petsc/c/include > ${PETSC_ARCH}/lib/petsc/conf/hpddm.log 2>&1 || \\\n (echo "**************************ERROR*************************************" && \\\n echo "Error copying HPDDM. Check ${PETSC_ARCH}/lib/petsc/conf/hpddm.log" && \\\n echo "********************************************************************" && \\\n touch ${PETSC_ARCH}/lib/petsc/conf/hpddm.errorflg && \\\n exit 1)'] Defined make rule "hpddmbuild" with dependencies "slepc-install slepc-build" and code ['@echo "*** Building and installing HPDDM ***"', '@${RM} -f ${PETSC_ARCH}/lib/petsc/conf/hpddm.errorflg', '@mpiicpc -O3 -mtune=native -fPIC -I/home/yim/FreeFem-install-dev/ff-petsc/c/include -I/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/include -I/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/fc/externalpackages/git.hpddm/include /home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/fc/externalpackages/git.hpddm/interface/hpddm_petsc.cpp -shared -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/c/lib -L/home/yim/FreeFem-install-dev/ff-petsc/c/lib -lslepc -o /home/yim/FreeFem-install-dev/ff-petsc/c/lib/libhpddm_petsc.so > ${PETSC_ARCH}/lib/petsc/conf/hpddm.log 2>&1 || \\\n (echo "**************************ERROR*************************************" && \\\n echo "Error building HPDDM. Check ${PETSC_ARCH}/lib/petsc/conf/hpddm.log" && \\\n echo "********************************************************************" && \\\n touch ${PETSC_ARCH}/lib/petsc/conf/hpddm.errorflg && \\\n exit 1)'] Defined make rule "hpddm-build" with dependencies "" and code [] Defined make rule "hpddm-install" with dependencies "hpddmbuild" and code [] ================================================================================ TEST checkSharedLibrary from config.packages.hpddm(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.hpddm(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.hpddm 2.463945 ================================================================================ TEST alternateConfigureLibrary from config.packages.fftw(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.fftw(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.fftw 0.000914 ================================================================================ TEST alternateConfigureLibrary from config.packages.elemental(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.elemental(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.elemental 0.000836 ================================================================================ TEST alternateConfigureLibrary from config.packages.ml(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.ml(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.ml 0.000956 ================================================================================ TEST alternateConfigureLibrary from config.packages.mkl_pardiso(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.mkl_pardiso(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.mkl_pardiso 0.000800 ================================================================================ TEST alternateConfigureLibrary from config.packages.SuperLU_DIST(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.SuperLU_DIST(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.SuperLU_DIST 0.000891 ================================================================================ TEST alternateConfigureLibrary from config.packages.SuperLU(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.SuperLU(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.SuperLU 0.000834 Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ TEST checkDependencies from config.packages.SuiteSparse(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.SuiteSparse(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.SuiteSparse(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:868) TESTING: configureLibrary from config.packages.SuiteSparse(config/BuildSystem/config/package.py:868) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional SuiteSparse Checking for library in User specified SUITESPARSE libraries: ['-Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib', '-L/home/yim/FreeFem-install-dev/ff-petsc/r/lib', '-lumfpack', '-lklu', '-lcholmod', '-lbtf', '-lccolamd', '-lcolamd', '-lcamd', '-lamd', '-lsuitesparseconfig'] Contents: ['include', 'lib', 'share'] ================================================================================ TEST check from config.libraries(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [umfpack_dl_wsolve cholmod_l_solve klu_l_solve] in library ['-Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib', '-L/home/yim/FreeFem-install-dev/ff-petsc/r/lib', '-lumfpack', '-lklu', '-lcholmod', '-lbtf', '-lccolamd', '-lcolamd', '-lcamd', '-lamd', '-lsuitesparseconfig'] ['/home/yim/FreeFem-install-dev/ff-petsc/r/lib/libmetis.a', '/home/yim/FreeFem-install-dev/ff-petsc/r/libmkl_intel_lp64.a', 'mkl_core', 'mkl_sequential', 'pthread', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64', '-lstdc++', '-ldl', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-lmpifort', '-lmpi', '-lmpigi', '-lrt', '-lpthread', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt', '-Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib', '-lifport', '-lifcoremt_pic', '-limf', '-lsvml', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s'] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char umfpack_dl_wsolve(); static void _check_umfpack_dl_wsolve() { umfpack_dl_wsolve(); } char cholmod_l_solve(); static void _check_cholmod_l_solve() { cholmod_l_solve(); } char klu_l_solve(); static void _check_klu_l_solve() { klu_l_solve(); } int main() { _check_umfpack_dl_wsolve(); _check_cholmod_l_solve(); _check_klu_l_solve();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lmetis -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r -L/home/yim/FreeFem-install-dev/ff-petsc/r -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -lstdc++ -ldl -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -lmpifort -lmpi -lmpigi -lrt -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lgcc_s -lirc_s -lquadmath -lstdc++ -ldl Defined "HAVE_LIBUMFPACK" to "1" Defined "HAVE_LIBKLU" to "1" Defined "HAVE_LIBCHOLMOD" to "1" Defined "HAVE_LIBBTF" to "1" Defined "HAVE_LIBCCOLAMD" to "1" Defined "HAVE_LIBCOLAMD" to "1" Defined "HAVE_LIBCAMD" to "1" Defined "HAVE_LIBAMD" to "1" Defined "HAVE_LIBSUITESPARSECONFIG" to "1" Checking for optional headers [] in User specified SUITESPARSE libraries: ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkInclude from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Found header files [] in ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Checking for headers ['umfpack.h', 'cholmod.h', 'klu.h'] in User specified SUITESPARSE libraries: ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkInclude from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['umfpack.h', 'cholmod.h', 'klu.h'] in ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Checking include with compiler flags var CPPFLAGS ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include', '/home/yim/FreeFem-install-dev/ff-petsc/r/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.parmetis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.PTScotch -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/home/yim/FreeFem-install-dev/ff-petsc/r/include -I/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include -I/home/yim/FreeFem-install-dev/ff-petsc/r/include /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Checking include with compiler flags var CPPFLAGS ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include', '/home/yim/FreeFem-install-dev/ff-petsc/r/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.parmetis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.PTScotch -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/home/yim/FreeFem-install-dev/ff-petsc/r/include -I/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include -I/home/yim/FreeFem-install-dev/ff-petsc/r/include /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Checking include with compiler flags var CPPFLAGS ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include', '/home/yim/FreeFem-install-dev/ff-petsc/r/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.parmetis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.PTScotch -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/home/yim/FreeFem-install-dev/ff-petsc/r/include -I/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include -I/home/yim/FreeFem-install-dev/ff-petsc/r/include /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['umfpack.h', 'cholmod.h', 'klu.h'] in ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkVersion from config.packages.SuiteSparse(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.SuiteSparse(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version All intermediate test results are stored in /tmp/petsc-xt4fpc64/config.packages.SuiteSparse Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "SuiteSparse_config.h" ;petscpkgver(SUITESPARSE_MAIN_VERSION.SUITESPARSE_SUB_VERSION.SUITESPARSE_SUBSUB_VERSION); Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.parmetis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.PTScotch -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.packages.SuiteSparse -I/home/yim/FreeFem-install-dev/ff-petsc/r/include /tmp/petsc-xt4fpc64/config.packages.SuiteSparse/conftest.c For suitesparse need 5.6.0 <= 5.7.1 <= ================================================================================ TEST checkSharedLibrary from config.packages.SuiteSparse(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.SuiteSparse(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.SuiteSparse 1.431712 ================================================================================ TEST alternateConfigureLibrary from config.packages.PaStiX(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.PaStiX(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.PaStiX 0.001290 ================================================================================ TEST checkDependencies from config.packages.scalapack(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.scalapack(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.scalapack(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:868) TESTING: configureLibrary from config.packages.scalapack(config/BuildSystem/config/package.py:868) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional scalapack Checking for library in User specified root directory SCALAPACK: ['/home/yim/FreeFem-install-dev/ff-petsc/r/lib/libscalapack.a'] Contents: ['include', 'lib', 'share'] ================================================================================ TEST check from config.libraries(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [pssytrd_] in library ['/home/yim/FreeFem-install-dev/ff-petsc/r/lib/libscalapack.a'] ['/home/yim/FreeFem-install-dev/ff-petsc/r/libmkl_intel_lp64.a', 'mkl_core', 'mkl_sequential', 'pthread', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64', '-lstdc++', '-ldl', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-lmpifort', '-lmpi', '-lmpigi', '-lrt', '-lpthread', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt', '-Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib', '-lifport', '-lifcoremt_pic', '-limf', '-lsvml', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s'] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pssytrd_(); static void _check_pssytrd_() { pssytrd_(); } int main() { _check_pssytrd_();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lscalapack -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r -L/home/yim/FreeFem-install-dev/ff-petsc/r -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -lstdc++ -ldl -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -lmpifort -lmpi -lmpigi -lrt -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lgcc_s -lirc_s -lquadmath -lstdc++ -ldl Defined "HAVE_LIBSCALAPACK" to "1" Checking for optional headers [] in User specified root directory SCALAPACK: ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkInclude from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Found header files [] in ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Checking for headers [] in User specified root directory SCALAPACK: ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkVersion from config.packages.scalapack(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.scalapack(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ================================================================================ TEST checkSharedLibrary from config.packages.scalapack(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.scalapack(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.scalapack 1.157276 ================================================================================ TEST alternateConfigureLibrary from config.packages.strumpack(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.strumpack(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.strumpack 0.000991 Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ TEST checkDependencies from config.packages.MUMPS(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.MUMPS(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.MUMPS(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:868) TESTING: configureLibrary from config.packages.MUMPS(config/BuildSystem/config/package.py:868) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional MUMPS Checking for library in User specified root directory MUMPS: ['/home/yim/FreeFem-install-dev/ff-petsc/r/lib/libcmumps.a', 'libdmumps.a', 'libsmumps.a', 'libzmumps.a', 'libmumps_common.a', 'libpord.a'] Contents: ['include', 'lib', 'share'] ================================================================================ TEST check from config.libraries(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [dmumps_c] in library ['/home/yim/FreeFem-install-dev/ff-petsc/r/lib/libcmumps.a', 'libdmumps.a', 'libsmumps.a', 'libzmumps.a', 'libmumps_common.a', 'libpord.a'] ['/home/yim/FreeFem-install-dev/ff-petsc/r/lib/libptesmumps.a', 'libptscotchparmetis.a', 'libptscotch.a', 'libptscotcherr.a', 'libesmumps.a', 'libscotch.a', 'libscotcherr.a', '/home/yim/FreeFem-install-dev/ff-petsc/r/lib/libparmetis.a', '/home/yim/FreeFem-install-dev/ff-petsc/r/lib/libmetis.a', '/home/yim/FreeFem-install-dev/ff-petsc/r/lib/libscalapack.a', '/home/yim/FreeFem-install-dev/ff-petsc/r/libmkl_intel_lp64.a', 'mkl_core', 'mkl_sequential', 'pthread', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64', '-lstdc++', '-ldl', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-lmpifort', '-lmpi', '-lmpigi', '-lrt', '-lpthread', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin', '-L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64', '-Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib', '-L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt', '-Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib', '-Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt', '-Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib', '-lifport', '-lifcoremt_pic', '-limf', '-lsvml', '-lm', '-lipgo', '-lirc', '-lgcc_s', '-lirc_s'] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dmumps_c(); static void _check_dmumps_c() { dmumps_c(); } int main() { _check_dmumps_c();; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/config.libraries/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.o -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lptesmumps -lptscotchparmetis -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lparmetis -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lmetis -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lscalapack -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r -L/home/yim/FreeFem-install-dev/ff-petsc/r -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -lstdc++ -ldl -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -lmpifort -lmpi -lmpigi -lrt -lpthread -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lgcc_s -lirc_s -lquadmath -lstdc++ -ldl Defined "HAVE_LIBCMUMPS" to "1" Defined "HAVE_LIBDMUMPS" to "1" Defined "HAVE_LIBSMUMPS" to "1" Defined "HAVE_LIBZMUMPS" to "1" Defined "HAVE_LIBMUMPS_COMMON" to "1" Defined "HAVE_LIBPORD" to "1" Checking for optional headers [] in User specified root directory MUMPS: ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkInclude from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Found header files [] in ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Checking for headers ['dmumps_c.h'] in User specified root directory MUMPS: ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkInclude from config.headers(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['dmumps_c.h'] in ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] Checking include with compiler flags var CPPFLAGS ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include', '/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/home/yim/FreeFem-install-dev/ff-petsc/r/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.parmetis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.PTScotch -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.packages.SuiteSparse -I/tmp/petsc-xt4fpc64/config.headers -I/home/yim/FreeFem-install-dev/ff-petsc/r/include -I/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include -I/home/yim/FreeFem-install-dev/ff-petsc/r/include -I/home/yim/FreeFem-install-dev/ff-petsc/r/include -I/home/yim/FreeFem-install-dev/ff-petsc/r/include /tmp/petsc-xt4fpc64/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['dmumps_c.h'] in ['/home/yim/FreeFem-install-dev/ff-petsc/r/include', '/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include'] ================================================================================ TEST checkVersion from config.packages.MUMPS(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.MUMPS(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version All intermediate test results are stored in /tmp/petsc-xt4fpc64/config.packages.MUMPS Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "dmumps_c.h" ;petscpkgver(MUMPS_VERSION); Running Executable WITHOUT threads to time it out Executing: mpiicc -E -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.parmetis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.PTScotch -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.packages.SuiteSparse -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.packages.MUMPS -I/home/yim/FreeFem-install-dev/ff-petsc/r/include /tmp/petsc-xt4fpc64/config.packages.MUMPS/conftest.c For mumps need <= 5.3.3 <= ================================================================================ TEST checkSharedLibrary from config.packages.MUMPS(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.MUMPS(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.MUMPS 1.477240 ================================================================================ TEST alternateConfigureLibrary from config.packages.MOAB(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.MOAB(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.MOAB 0.001315 ================================================================================ TEST alternateConfigureLibrary from config.packages.Chombo(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.Chombo(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.Chombo 0.000942 ================================================================================ TEST alternateConfigureLibrary from config.packages.hypre(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.hypre(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.hypre 0.000950 ================================================================================ TEST alternateConfigureLibrary from config.packages.Trilinos(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.Trilinos(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.Trilinos 0.000824 ================================================================================ TEST alternateConfigureLibrary from config.packages.xSDKTrilinos(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.xSDKTrilinos(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.xSDKTrilinos 0.000845 ================================================================================ TEST alternateConfigureLibrary from config.packages.mstk(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.mstk(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.mstk 0.000835 ================================================================================ TEST alternateConfigureLibrary from config.packages.amanzi(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.amanzi(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.amanzi 0.000810 ================================================================================ TEST alternateConfigureLibrary from config.packages.MFEM(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/MFEM.py:171) TESTING: alternateConfigureLibrary from config.packages.MFEM(config/BuildSystem/config/packages/MFEM.py:171) Defined make rule "mfem-build" with dependencies "" and code [] Defined make rule "mfem-install" with dependencies "" and code [] child config.packages.MFEM 0.001313 ================================================================================ TEST alternateConfigureLibrary from config.packages.AMReX(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/BuildSystem/config/packages/AMReX.py:164) TESTING: alternateConfigureLibrary from config.packages.AMReX(config/BuildSystem/config/packages/AMReX.py:164) Defined make rule "amrex-build" with dependencies "" and code [] Defined make rule "amrex-install" with dependencies "" and code [] child config.packages.AMReX 0.001298 ================================================================================ TEST configureRTLDDefault from PETSc.Configure(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/Configure.py:684) TESTING: configureRTLDDefault from PETSc.Configure(config/PETSc/Configure.py:684) All intermediate test results are stored in /tmp/petsc-xt4fpc64/PETSc.Configure Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.Configure -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 2 stderr: /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.c(4): error: identifier "RTLD_DEFAULT" is undefined void *ptr = RTLD_DEFAULT; ^ compilation aborted for /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.c (code 2) Source: #include "confdefs.h" #include "conffix.h" #include void *ptr = RTLD_DEFAULT; int main() { ; return 0; } ================================================================================ TEST configurePrefetch from PETSc.Configure(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/Configure.py:509) TESTING: configurePrefetch from PETSc.Configure(config/PETSc/Configure.py:509) Sees if there are any prefetch functions supported Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.Configure -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *v = 0;_mm_prefetch((const char*)v,_MM_HINT_NTA); ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/PETSc.Configure/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_XMMINTRIN_H" to "1" Defined "Prefetch(a,b,c)" to "_mm_prefetch((const char*)(a),(c))" Defined "PREFETCH_HINT_NTA" to "_MM_HINT_NTA" Defined "PREFETCH_HINT_T0" to "_MM_HINT_T0" Defined "PREFETCH_HINT_T1" to "_MM_HINT_T1" Defined "PREFETCH_HINT_T2" to "_MM_HINT_T2" ================================================================================ TEST configureUnused from PETSc.Configure(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/Configure.py:570) TESTING: configureUnused from PETSc.Configure(config/PETSc/Configure.py:570) Sees if __attribute((unused)) is supported Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.Configure -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" __attribute((unused)) static int myfunc(__attribute((unused)) void *name){ return 1;} int main() { int i = 0; int j = myfunc(&i); typedef void* atype; __attribute((unused)) atype a; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/PETSc.Configure/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.o -lquadmath -lstdc++ -ldl Defined "UNUSED" to "__attribute((unused))" ================================================================================ TEST configureDeprecated from PETSc.Configure(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/Configure.py:588) TESTING: configureDeprecated from PETSc.Configure(config/PETSc/Configure.py:588) Check if __attribute((deprecated)) is supported Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.Configure -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" __attribute((deprecated)) static int myfunc(void) { return 1;} int main() { ; return 0; } Defined "DEPRECATED_FUNCTION(why)" to "__attribute((deprecated))" Defined "DEPRECATED_TYPEDEF(why)" to "__attribute((deprecated))" Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.Configure -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.c(3): warning #2650: attributes ignored here enum E {oldval __attribute((deprecated)), newval }; ^ Source: #include "confdefs.h" #include "conffix.h" enum E {oldval __attribute((deprecated)), newval }; int main() { ; return 0; } Defined "DEPRECATED_ENUM(why)" to " " Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.Configure -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define TEST _Pragma("GCC warning "Testing _Pragma"") value int main() { ; return 0; } Defined "DEPRECATED_MACRO(why)" to "_Pragma(why)" ================================================================================ TEST configureIsatty from PETSc.Configure(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/Configure.py:582) TESTING: configureIsatty from PETSc.Configure(config/PETSc/Configure.py:582) Check if the Unix C function isatty() works correctly Actually just assumes it does not work correctly on batch systems Defined "USE_ISATTY" to "1" ================================================================================ TEST configureExpect from PETSc.Configure(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/Configure.py:637) TESTING: configureExpect from PETSc.Configure(config/PETSc/Configure.py:637) Sees if the __builtin_expect directive is supported Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.Configure -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__builtin_expect(0,1)) return 1;; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/PETSc.Configure/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_BUILTIN_EXPECT" to "1" ================================================================================ TEST configureAlign from PETSc.Configure(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/Configure.py:621) TESTING: configureAlign from PETSc.Configure(config/PETSc/Configure.py:621) Check if __attribute(aligned) is supported Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.Configure -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" struct mystruct {int myint;} __attribute((aligned(16))); char assert_aligned[(sizeof(struct mystruct)==16)*2-1]; int main() { ; return 0; } Defined "ATTRIBUTEALIGNED(size)" to "__attribute((aligned(size)))" Defined "HAVE_ATTRIBUTEALIGNED" to "1" ================================================================================ TEST configureFunctionName from PETSc.Configure(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/Configure.py:644) TESTING: configureFunctionName from PETSc.Configure(config/PETSc/Configure.py:644) Sees if the compiler supports __func__ or a variant. Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.Configure -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.Configure -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/PETSc.Configure/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.o -lquadmath -lstdc++ -ldl Defined "FUNCTION_NAME_C" to "__func__" Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.Configure -O3 -mtune=native -fPIC /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicpc -c -o /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.o -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.Configure -O3 -mtune=native -fPIC /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicpc -o /tmp/petsc-xt4fpc64/PETSc.Configure/conftest -O3 -mtune=native /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.o -lquadmath -lstdc++ -ldl Defined "FUNCTION_NAME_CXX" to "__func__" ================================================================================ TEST configureIntptrt from PETSc.Configure(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/Configure.py:662) TESTING: configureIntptrt from PETSc.Configure(config/PETSc/Configure.py:662) Determine what to use for uintptr_t Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.Configure -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int x; uintptr_t i = (uintptr_t)&x;; return 0; } Defined "UINTPTR_T" to "uintptr_t" ================================================================================ TEST configureSolaris from PETSc.Configure(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/Configure.py:689) TESTING: configureSolaris from PETSc.Configure(config/PETSc/Configure.py:689) Solaris specific stuff ================================================================================ TEST configureLinux from PETSc.Configure(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/Configure.py:702) TESTING: configureLinux from PETSc.Configure(config/PETSc/Configure.py:702) Linux specific stuff Defined "HAVE_DOUBLE_ALIGN_MALLOC" to "1" ================================================================================ TEST configureWin32 from PETSc.Configure(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/Configure.py:708) TESTING: configureWin32 from PETSc.Configure(config/PETSc/Configure.py:708) Win32 non-cygwin specific stuff Checking for functions [GetComputerName] in library ['Kernel32.lib'] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.Configure -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Possible ERROR while running compiler: exit code 4 stderr: /tmp/petsc-xt4fpc64/config.libraries/conftest.c(4): catastrophic error: cannot open source file "windows.h" #include ^ compilation aborted for /tmp/petsc-xt4fpc64/config.libraries/conftest.c (code 4) Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetComputerName() { GetComputerName(NULL,NULL);; } int main() { _check_GetComputerName();; return 0; } Compile failed inside link Checking for functions [GetComputerName] in library ['kernel32'] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.Configure -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Possible ERROR while running compiler: exit code 4 stderr: /tmp/petsc-xt4fpc64/config.libraries/conftest.c(4): catastrophic error: cannot open source file "windows.h" #include ^ compilation aborted for /tmp/petsc-xt4fpc64/config.libraries/conftest.c (code 4) Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetComputerName() { GetComputerName(NULL,NULL);; } int main() { _check_GetComputerName();; return 0; } Compile failed inside link Checking for functions [GetUserName] in library ['Advapi32.lib'] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.Configure -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Possible ERROR while running compiler: exit code 4 stderr: /tmp/petsc-xt4fpc64/config.libraries/conftest.c(4): catastrophic error: cannot open source file "windows.h" #include ^ compilation aborted for /tmp/petsc-xt4fpc64/config.libraries/conftest.c (code 4) Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetUserName() { GetUserName(NULL,NULL);; } int main() { _check_GetUserName();; return 0; } Compile failed inside link Checking for functions [GetUserName] in library ['advapi32'] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.Configure -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Possible ERROR while running compiler: exit code 4 stderr: /tmp/petsc-xt4fpc64/config.libraries/conftest.c(4): catastrophic error: cannot open source file "windows.h" #include ^ compilation aborted for /tmp/petsc-xt4fpc64/config.libraries/conftest.c (code 4) Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetUserName() { GetUserName(NULL,NULL);; } int main() { _check_GetUserName();; return 0; } Compile failed inside link Checking for functions [GetDC] in library ['User32.lib'] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.Configure -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Possible ERROR while running compiler: exit code 4 stderr: /tmp/petsc-xt4fpc64/config.libraries/conftest.c(4): catastrophic error: cannot open source file "windows.h" #include ^ compilation aborted for /tmp/petsc-xt4fpc64/config.libraries/conftest.c (code 4) Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetDC() { GetDC(0);; } int main() { _check_GetDC();; return 0; } Compile failed inside link Checking for functions [GetDC] in library ['user32'] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.Configure -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Possible ERROR while running compiler: exit code 4 stderr: /tmp/petsc-xt4fpc64/config.libraries/conftest.c(4): catastrophic error: cannot open source file "windows.h" #include ^ compilation aborted for /tmp/petsc-xt4fpc64/config.libraries/conftest.c (code 4) Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetDC() { GetDC(0);; } int main() { _check_GetDC();; return 0; } Compile failed inside link Checking for functions [CreateCompatibleDC] in library ['Gdi32.lib'] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.Configure -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Possible ERROR while running compiler: exit code 4 stderr: /tmp/petsc-xt4fpc64/config.libraries/conftest.c(4): catastrophic error: cannot open source file "windows.h" #include ^ compilation aborted for /tmp/petsc-xt4fpc64/config.libraries/conftest.c (code 4) Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_CreateCompatibleDC() { CreateCompatibleDC(0);; } int main() { _check_CreateCompatibleDC();; return 0; } Compile failed inside link Checking for functions [CreateCompatibleDC] in library ['gdi32'] [] Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.libraries/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/PETSc.Configure -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.libraries/conftest.c Possible ERROR while running compiler: exit code 4 stderr: /tmp/petsc-xt4fpc64/config.libraries/conftest.c(4): catastrophic error: cannot open source file "windows.h" #include ^ compilation aborted for /tmp/petsc-xt4fpc64/config.libraries/conftest.c (code 4) Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_CreateCompatibleDC() { CreateCompatibleDC(0);; } int main() { _check_CreateCompatibleDC();; return 0; } Compile failed inside link Checking for type: int32_t Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/config.types/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/PETSc.Configure -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a;; return 0; } int32_t found Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/PETSc.Configure -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { uid_t u; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/PETSc.Configure -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if defined(PETSC_HAVE_UNISTD_H) #include #endif int main() { int a=R_OK; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/PETSc.Configure/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.o -lquadmath -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/PETSc.Configure -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int a=0; if (S_ISDIR(a)){} ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/PETSc.Configure/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.o -lquadmath -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/PETSc.Configure -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 4 stderr: /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.c(3): catastrophic error: cannot open source file "windows.h" #include ^ compilation aborted for /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.c (code 4) Source: #include "confdefs.h" #include "conffix.h" #include int main() { LARGE_INTEGER a; DWORD b=a.u.HighPart; ; return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/PETSc.Configure -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 4 stderr: /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.c(3): catastrophic error: cannot open source file "windows.h" #include ^ compilation aborted for /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.c (code 4) Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int flags = O_BINARY;; return 0; } Defined "REPLACE_DIR_SEPARATOR" to "'\\'" Defined "DIR_SEPARATOR" to "'/'" Defined "DIR" to ""/home/yim/FreeFem-install-dev/ff-petsc/c"" Defined make macro "wPETSC_DIR" to "/home/yim/FreeFem-install-dev/ff-petsc/c" Defined "ARCH" to """" ================================================================================ TEST configureCygwinBrokenPipe from PETSc.Configure(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/Configure.py:780) TESTING: configureCygwinBrokenPipe from PETSc.Configure(config/PETSc/Configure.py:780) Cygwin version <= 1.7.18 had issues with pipes and long commands invoked from gnu-make http://cygwin.com/ml/cygwin/2013-05/msg00340.html Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ TEST configureDefaultArch from PETSc.Configure(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/Configure.py:796) TESTING: configureDefaultArch from PETSc.Configure(config/PETSc/Configure.py:796) ================================================================================ TEST configureScript from PETSc.Configure(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/Configure.py:813) TESTING: configureScript from PETSc.Configure(config/PETSc/Configure.py:813) Output a script in the conf directory which will reproduce the configuration ================================================================================ TEST configureInstall from PETSc.Configure(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/Configure.py:852) TESTING: configureInstall from PETSc.Configure(config/PETSc/Configure.py:852) Setup the directories for installation Defined make rule "print_mesg_after_build" with dependencies "" and code ['-@echo "Now to install the libraries do:"', '-@echo "make PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} install"', '-@echo "========================================="'] ================================================================================ TEST configureGCOV from PETSc.Configure(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/Configure.py:864) TESTING: configureGCOV from PETSc.Configure(config/PETSc/Configure.py:864) ================================================================================ TEST configureAtoll from PETSc.Configure(/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/config/PETSc/Configure.py:565) TESTING: configureAtoll from PETSc.Configure(config/PETSc/Configure.py:565) Checks if atoll exists Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/PETSc.Configure -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { long v = atoll("25"); return 0; } Running Executable WITHOUT threads to time it out Executing: mpiicc -o /tmp/petsc-xt4fpc64/PETSc.Configure/conftest -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_ATOLL" to "1" Running Executable WITHOUT threads to time it out Executing: mpiicc -show stdout: icc -I/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker /ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Xlinker -rpath -Xlinker /ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Xlinker -rpath -Xlinker /opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -Xlinker -rpath -Xlinker /opt/intel/mpi-rt/2017.0.0/intel64/lib -lmpifort -lmpi -lmpigi -ldl -lrt -lpthread Defined "MPICC_SHOW" to ""icc -I/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker /ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Xlinker -rpath -Xlinker /ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Xlinker -rpath -Xlinker /opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -Xlinker -rpath -Xlinker /opt/intel/mpi-rt/2017.0.0/intel64/lib -lmpifort -lmpi -lmpigi -ldl -lrt -lpthread"" Defined make macro "CC_FLAGS" to " -fPIC -O3 -mtune=native " Defined "HAVE_CXX" to "1" Defined make macro "CXXPP_FLAGS" to " " Defined make macro "CXX_FLAGS" to " -O3 -mtune=native -fPIC " Defined make macro "CXX_LINKER" to "mpiicpc" Defined make macro "CXX_LINKER_FLAGS" to " -O3 -mtune=native" Defined make macro "CPP_FLAGS" to "" Defined make macro "PCC" to "mpiicc" Defined make macro "PCC_FLAGS" to " -fPIC -O3 -mtune=native " Defined make macro "PCPP_FLAGS" to "" Defined make macro "PFLAGS" to "${CFLAGS}" Defined make macro "PPPFLAGS" to "${CPPFLAGS}" Defined make macro "PY_CFLAGS" to "" Defined make macro "PY_CPPFLAGS" to "" Defined make macro "CC_SUFFIX" to "o" Defined make macro "PCC_LINKER" to "mpiicc" Defined make macro "PCC_LINKER_FLAGS" to " -fPIC -O3 -mtune=native" Defined make macro "CC_LINKER_SUFFIX" to "" Defined make macro "FPP_FLAGS" to "" Defined make macro "FC_FLAGS" to " -fPIC -O3 -mtune=native " Defined make macro "FC_SUFFIX" to "o" Defined make macro "FC_LINKER" to "mpiifort" Defined make macro "FC_LINKER_FLAGS" to " -fPIC -O3 -mtune=native " Defined make macro "FC_MODULE_FLAG" to "-I" Defined make macro "FC_MODULE_OUTPUT_FLAG" to "-module " Defined make macro "SL_LINKER" to "mpiicc" Defined make macro "SL_LINKER_FLAGS" to "${PCC_LINKER_FLAGS}" Defined make macro "SL_LINKER_SUFFIX" to "so" Defined "SLSUFFIX" to ""so"" Defined make macro "SL_LINKER_LIBS" to "${PETSC_EXTERNAL_LIB_BASIC}" Defined make macro "PETSC_LANGUAGE" to "CONLY" Defined make macro "PETSC_SCALAR" to "complex" Defined make macro "PETSC_PRECISION" to "double" Running Executable WITHOUT threads to time it out Executing: CC -VV Defined "USE_SOCKET_VIEWER" to "1" Running Executable WITHOUT threads to time it out Executing: mpiicc -c -o /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.o -I/tmp/petsc-xt4fpc64/config.compilers -I/tmp/petsc-xt4fpc64/config.utilities.closure -I/tmp/petsc-xt4fpc64/config.compilersFortran -I/tmp/petsc-xt4fpc64/config.headers -I/tmp/petsc-xt4fpc64/config.utilities.cacheDetails -I/tmp/petsc-xt4fpc64/config.functions -I/tmp/petsc-xt4fpc64/config.utilities.featureTestMacros -I/tmp/petsc-xt4fpc64/config.utilities.missing -I/tmp/petsc-xt4fpc64/PETSc.options.scalarTypes -I/tmp/petsc-xt4fpc64/config.packages.MPI -I/tmp/petsc-xt4fpc64/config.packages.metis -I/tmp/petsc-xt4fpc64/config.packages.pthread -I/tmp/petsc-xt4fpc64/config.packages.BlasLapack -I/tmp/petsc-xt4fpc64/config.setCompilers -I/tmp/petsc-xt4fpc64/config.libraries -I/tmp/petsc-xt4fpc64/config.types -I/tmp/petsc-xt4fpc64/PETSc.Configure -fPIC -O3 -mtune=native /tmp/petsc-xt4fpc64/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { setsockopt(0,SOL_SOCKET,SO_REUSEADDR,0,0); return 0; } Defined "HAVE_SO_REUSEADDR" to "1" Defined "HAVE_MUMPS" to "1" Defined make macro "MUMPS_LIB" to "-Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord" Defined make macro "MUMPS_INCLUDE" to "-I/home/yim/FreeFem-install-dev/ff-petsc/r/include" Defined "HAVE_SCALAPACK" to "1" Defined make macro "SCALAPACK_LIB" to "-Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lscalapack" Defined make macro "SCALAPACK_INCLUDE" to "" Defined "HAVE_SUITESPARSE" to "1" Defined make macro "SUITESPARSE_LIB" to "-Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig" Defined make macro "SUITESPARSE_INCLUDE" to "-I/home/yim/FreeFem-install-dev/ff-petsc/r/include" Defined "HAVE_HPDDM" to "1" Defined make macro "HPDDM_LIB" to "" Defined make macro "HPDDM_INCLUDE" to "-I/home/yim/FreeFem-install-dev/ff-petsc/c/include" Defined make macro "BLASLAPACK_LIB" to "-Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r -L/home/yim/FreeFem-install-dev/ff-petsc/r -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread" Defined make macro "BLASLAPACK_INCLUDE" to "" Defined "HAVE_PTSCOTCH" to "1" Defined make macro "PTSCOTCH_LIB" to "-Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lptesmumps -lptscotchparmetis -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr" Defined make macro "PTSCOTCH_INCLUDE" to "-I/home/yim/FreeFem-install-dev/ff-petsc/r/include" Defined "HAVE_PTHREAD" to "1" Defined make macro "PTHREAD_LIB" to "" Defined make macro "PTHREAD_INCLUDE" to "" Defined "HAVE_PARMETIS" to "1" Defined make macro "PARMETIS_LIB" to "-Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lparmetis" Defined make macro "PARMETIS_INCLUDE" to "-I/home/yim/FreeFem-install-dev/ff-petsc/r/include" Defined "HAVE_METIS" to "1" Defined make macro "METIS_LIB" to "-Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lmetis" Defined make macro "METIS_INCLUDE" to "-I/home/yim/FreeFem-install-dev/ff-petsc/r/include" Defined "HAVE_TETGEN" to "1" Defined make macro "TETGEN_LIB" to "-Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -ltet" Defined make macro "TETGEN_INCLUDE" to "-I/home/yim/FreeFem-install-dev/ff-petsc/r/include" Defined "HAVE_MATHLIB" to "1" Defined make macro "MATHLIB_LIB" to "" Defined make macro "MATHLIB_INCLUDE" to "" Defined "HAVE_REGEX" to "1" Defined make macro "REGEX_LIB" to "" Defined make macro "REGEX_INCLUDE" to "" Defined make macro "MPI_LIB" to "" Defined make macro "MPI_INCLUDE" to "" Defined make macro "PETSC_EXTERNAL_LIB_BASIC" to "-Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r -L/home/yim/FreeFem-install-dev/ff-petsc/r -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lscalapack -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -lptesmumps -lptscotchparmetis -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr -lparmetis -lmetis -ltet -lstdc++ -ldl -lmpifort -lmpi -lmpigi -lrt -lpthread -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lgcc_s -lirc_s -lquadmath -lstdc++ -ldl" Defined make macro "PETSC_CC_INCLUDES" to "-I/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/include -I/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/fc/include -I/home/yim/FreeFem-install-dev/ff-petsc/r/include -I/home/yim/FreeFem-install-dev/ff-petsc/c/include" Defined make macro "PETSC_CC_INCLUDES_INSTALL" to "-I/home/yim/FreeFem-install-dev/ff-petsc/c/include -I/home/yim/FreeFem-install-dev/ff-petsc/r/include" Defined make macro "PETSC_FC_INCLUDES" to "-I/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/include -I/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/fc/include -I/home/yim/FreeFem-install-dev/ff-petsc/r/include -I/home/yim/FreeFem-install-dev/ff-petsc/c/include" Defined make macro "PETSC_FC_INCLUDES_INSTALL" to "-I/home/yim/FreeFem-install-dev/ff-petsc/c/include -I/home/yim/FreeFem-install-dev/ff-petsc/r/include" Defined "LIB_DIR" to ""/home/yim/FreeFem-install-dev/ff-petsc/c/lib"" Defined make macro "LIBNAME" to "${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX}" Defined make macro "SHLIBS" to "libpetsc" Defined make macro "PETSC_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_KSP_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_TS_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_TAO_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_WITH_EXTERNAL_LIB" to "-L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r -L/home/yim/FreeFem-install-dev/ff-petsc/r -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib -lpetsc -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lscalapack -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -lptesmumps -lptscotchparmetis -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr -lparmetis -lmetis -ltet -lstdc++ -ldl -lmpifort -lmpi -lmpigi -lrt -lpthread -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lgcc_s -lirc_s -lquadmath -lstdc++ -ldl" Defined "USE_SINGLE_LIBRARY" to "1" Defined make macro "PETSC_SYS_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_VEC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_MAT_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_DM_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_KSP_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_SNES_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_TS_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_TAO_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_CHARACTERISTIC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_CONTRIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "CONFIGURE_OPTIONS" to "--prefix=/home/yim/FreeFem-install-dev/ff-petsc/c MAKEFLAGS= --with-debugging=0 COPTFLAGS=\"-O3 -mtune=native\" CXXOPTFLAGS=\"-O3 -mtune=native\" FOPTFLAGS=\"-O3 -mtune=native\" --with-cxx-dialect=C++11 --with-ssl=0 --with-x=0 --with-fortran-bindings=0 --with-cudac=0 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-scalar-type=complex --with-blaslapack-dir=/home/yim/FreeFem-install-dev/ff-petsc/r --with-metis-dir=/home/yim/FreeFem-install-dev/ff-petsc/r --with-ptscotch-dir=/home/yim/FreeFem-install-dev/ff-petsc/r --with-suitesparse-include=/home/yim/FreeFem-install-dev/ff-petsc/r/include --with-suitesparse-lib=\"-Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig\" --with-parmetis-dir=/home/yim/FreeFem-install-dev/ff-petsc/r --with-tetgen-dir=/home/yim/FreeFem-install-dev/ff-petsc/r --download-slepc --download-hpddm --download-hpddm-commit=ce6ce80 --with-scalapack-dir=/home/yim/FreeFem-install-dev/ff-petsc/r --with-mumps-dir=/home/yim/FreeFem-install-dev/ff-petsc/r PETSC_ARCH=fc" ================================================================================ child PETSc.Configure 13.024252 child sum 108.016356 child total 108.040522 **** fc/lib/petsc/conf/petscvariables **** FAST_AR_FLAGS = Scq AR_FLAGS = cr C_VERSION = icc (ICC) 18.0.5 20180823 MPICC_SHOW = icc -I/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker /ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Xlinker -rpath -Xlinker /ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Xlinker -rpath -Xlinker /opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -Xlinker -rpath -Xlinker /opt/intel/mpi-rt/2017.0.0/intel64/lib -lmpifort -lmpi -lmpigi -ldl -lrt -lpthread Cxx_VERSION = icpc (ICC) 18.0.5 20180823 MPICXX_SHOW = Unavailable FC_VERSION = ifort (IFORT) 18.0.5 20180823 MPIFC_SHOW = Unavailable C_DEPFLAGS = -MMD -MP CXX_DEPFLAGS = -MMD -MP FC_DEFINE_FLAG = -D wPETSC_DIR = /home/yim/FreeFem-install-dev/ff-petsc/c CC_FLAGS = -fPIC -O3 -mtune=native CXXPP_FLAGS = CXX_FLAGS = -O3 -mtune=native -fPIC CXX_LINKER = mpiicpc CXX_LINKER_FLAGS = -O3 -mtune=native CPP_FLAGS = PCC = mpiicc PCC_FLAGS = -fPIC -O3 -mtune=native PCPP_FLAGS = PFLAGS = ${CFLAGS} PPPFLAGS = ${CPPFLAGS} PY_CFLAGS = PY_CPPFLAGS = CC_SUFFIX = o PCC_LINKER = mpiicc PCC_LINKER_FLAGS = -fPIC -O3 -mtune=native CC_LINKER_SUFFIX = FPP_FLAGS = FC_FLAGS = -fPIC -O3 -mtune=native FC_SUFFIX = o FC_LINKER = mpiifort FC_LINKER_FLAGS = -fPIC -O3 -mtune=native FC_MODULE_FLAG = -I FC_MODULE_OUTPUT_FLAG = -module SL_LINKER = mpiicc SL_LINKER_FLAGS = ${PCC_LINKER_FLAGS} SL_LINKER_SUFFIX = so SL_LINKER_LIBS = ${PETSC_EXTERNAL_LIB_BASIC} PETSC_LANGUAGE = CONLY PETSC_SCALAR = complex PETSC_PRECISION = double MUMPS_LIB = -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord MUMPS_INCLUDE = -I/home/yim/FreeFem-install-dev/ff-petsc/r/include SCALAPACK_LIB = -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lscalapack SCALAPACK_INCLUDE = SUITESPARSE_LIB = -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig SUITESPARSE_INCLUDE = -I/home/yim/FreeFem-install-dev/ff-petsc/r/include HPDDM_LIB = HPDDM_INCLUDE = -I/home/yim/FreeFem-install-dev/ff-petsc/c/include BLASLAPACK_LIB = -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r -L/home/yim/FreeFem-install-dev/ff-petsc/r -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread BLASLAPACK_INCLUDE = PTSCOTCH_LIB = -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lptesmumps -lptscotchparmetis -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr PTSCOTCH_INCLUDE = -I/home/yim/FreeFem-install-dev/ff-petsc/r/include PTHREAD_LIB = PTHREAD_INCLUDE = PARMETIS_LIB = -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lparmetis PARMETIS_INCLUDE = -I/home/yim/FreeFem-install-dev/ff-petsc/r/include METIS_LIB = -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lmetis METIS_INCLUDE = -I/home/yim/FreeFem-install-dev/ff-petsc/r/include TETGEN_LIB = -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -ltet TETGEN_INCLUDE = -I/home/yim/FreeFem-install-dev/ff-petsc/r/include MATHLIB_LIB = MATHLIB_INCLUDE = REGEX_LIB = REGEX_INCLUDE = MPI_LIB = MPI_INCLUDE = PETSC_EXTERNAL_LIB_BASIC = -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r -L/home/yim/FreeFem-install-dev/ff-petsc/r -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lscalapack -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -lptesmumps -lptscotchparmetis -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr -lparmetis -lmetis -ltet -lstdc++ -ldl -lmpifort -lmpi -lmpigi -lrt -lpthread -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lgcc_s -lirc_s -lquadmath -lstdc++ -ldl PETSC_CC_INCLUDES = -I/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/include -I/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/fc/include -I/home/yim/FreeFem-install-dev/ff-petsc/r/include -I/home/yim/FreeFem-install-dev/ff-petsc/c/include PETSC_CC_INCLUDES_INSTALL = -I/home/yim/FreeFem-install-dev/ff-petsc/c/include -I/home/yim/FreeFem-install-dev/ff-petsc/r/include PETSC_FC_INCLUDES = -I/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/include -I/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/fc/include -I/home/yim/FreeFem-install-dev/ff-petsc/r/include -I/home/yim/FreeFem-install-dev/ff-petsc/c/include PETSC_FC_INCLUDES_INSTALL = -I/home/yim/FreeFem-install-dev/ff-petsc/c/include -I/home/yim/FreeFem-install-dev/ff-petsc/r/include LIBNAME = ${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX} SHLIBS = libpetsc PETSC_LIB_BASIC = -lpetsc PETSC_KSP_LIB_BASIC = -lpetsc PETSC_TS_LIB_BASIC = -lpetsc PETSC_TAO_LIB_BASIC = -lpetsc PETSC_WITH_EXTERNAL_LIB = -L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r -L/home/yim/FreeFem-install-dev/ff-petsc/r -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64 -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Wl,-rpath,/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Wl,-rpath,/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -L/ssoft/spack/external/intel/2018.4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib/gcc/x86_64-pc-linux-gnu/6.5.0 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib64 -Wl,-rpath,/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -L/ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/gcc-6.5.0-zh4rtcgdquhyaobmlogojyf7incbzjkf/lib -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib -lpetsc -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lscalapack -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -lptesmumps -lptscotchparmetis -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr -lparmetis -lmetis -ltet -lstdc++ -ldl -lmpifort -lmpi -lmpigi -lrt -lpthread -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lgcc_s -lirc_s -lquadmath -lstdc++ -ldl PETSC_SYS_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_VEC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_MAT_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_DM_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_KSP_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_SNES_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_TS_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_TAO_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_CHARACTERISTIC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_CONTRIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CONFIGURE_OPTIONS = --prefix=/home/yim/FreeFem-install-dev/ff-petsc/c MAKEFLAGS= --with-debugging=0 COPTFLAGS=\"-O3 -mtune=native\" CXXOPTFLAGS=\"-O3 -mtune=native\" FOPTFLAGS=\"-O3 -mtune=native\" --with-cxx-dialect=C++11 --with-ssl=0 --with-x=0 --with-fortran-bindings=0 --with-cudac=0 --with-cc=mpiicc --with-cxx=mpiicpc --with-fc=mpiifort --with-scalar-type=complex --with-blaslapack-dir=/home/yim/FreeFem-install-dev/ff-petsc/r --with-metis-dir=/home/yim/FreeFem-install-dev/ff-petsc/r --with-ptscotch-dir=/home/yim/FreeFem-install-dev/ff-petsc/r --with-suitesparse-include=/home/yim/FreeFem-install-dev/ff-petsc/r/include --with-suitesparse-lib=\"-Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig\" --with-parmetis-dir=/home/yim/FreeFem-install-dev/ff-petsc/r --with-tetgen-dir=/home/yim/FreeFem-install-dev/ff-petsc/r --download-slepc --download-hpddm --download-hpddm-commit=ce6ce80 --with-scalapack-dir=/home/yim/FreeFem-install-dev/ff-petsc/r --with-mumps-dir=/home/yim/FreeFem-install-dev/ff-petsc/r PETSC_ARCH=fc MKDIR = /usr/bin/mkdir -p SHELL = /usr/bin/sh SED = /usr/bin/sed SEDINPLACE = /usr/bin/sed -i MV = /usr/bin/mv CP = /usr/bin/cp GREP = /usr/bin/grep RM = /usr/bin/rm -f DIFF = /usr/bin/diff -w PYTHON = /usr/bin/python3 M4 = /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/m4-1.4.18-h33f3lybhm6walsacsss2tt2g4pkl7ue/bin/m4 CC = mpiicc CPP = mpiicc -E CXX = mpiicpc CXXPP = mpiicpc -E FC = mpiifort AR = /usr/bin/ar RANLIB = /usr/bin/ranlib AR_LIB_SUFFIX = a LD_SHARED = mpiicc DYNAMICLINKER = mpiicc CC_LINKER_SLFLAG = -Wl,-rpath, FC_LINKER_SLFLAG = -Wl,-rpath, CLANGUAGE = C GIT = git PREFIXDIR = /home/yim/FreeFem-install-dev/ff-petsc/c PETSC_SCALAR_SIZE = 64 PETSC_INDEX_SIZE = 32 MAKE = /usr/bin/gmake OMAKE_PRINTDIR = /usr/bin/gmake --print-directory OMAKE = /usr/bin/gmake --no-print-directory MAKE_PAR_OUT_FLG = MAKE_NP = 21 MAKE_TEST_NP = 14 MAKE_LOAD = 42.0 NPMAX = 28 SONAME_FUNCTION = $(1).so.$(2) SL_LINKER_FUNCTION = -shared -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2)) BUILDSHAREDLIB = yes GDB = /usr/bin/gdb DSYMUTIL = true MPIEXEC = mpiexec CMAKE = /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/cmake-3.14.4-kaggpee57xa4of7juzpykjw2wod4yxeh/bin/cmake CTEST = /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/cmake-3.14.4-kaggpee57xa4of7juzpykjw2wod4yxeh/bin/ctest HPDDM = yes SLEPC = yes **** fc/lib/petsc/conf/petscrules **** print_mesg_after_build: -@echo "Now to install the libraries do:" -@echo "make PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} install" -@echo "=========================================" libc: ${LIBNAME}(${OBJSC}) libcxx: ${LIBNAME}(${OBJSCXX}) libcu: ${LIBNAME}(${OBJSCU}) libf: ${OBJSF} -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} shared_arch: shared_linux amrex-build: amrex-install: mfem-build: mfem-install: hpddmcopy: @echo "*** Copying HPDDM ***" @${RM} -f ${PETSC_ARCH}/lib/petsc/conf/hpddm.errorflg @ mkdir -p /home/yim/FreeFem-install-dev/ff-petsc/c/include && cp /home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/fc/externalpackages/git.hpddm/include/* /home/yim/FreeFem-install-dev/ff-petsc/c/include > ${PETSC_ARCH}/lib/petsc/conf/hpddm.log 2>&1 || \ (echo "**************************ERROR*************************************" && \ echo "Error copying HPDDM. Check ${PETSC_ARCH}/lib/petsc/conf/hpddm.log" && \ echo "********************************************************************" && \ touch ${PETSC_ARCH}/lib/petsc/conf/hpddm.errorflg && \ exit 1) hpddmbuild: slepc-install slepc-build @echo "*** Building and installing HPDDM ***" @${RM} -f ${PETSC_ARCH}/lib/petsc/conf/hpddm.errorflg @mpiicpc -O3 -mtune=native -fPIC -I/home/yim/FreeFem-install-dev/ff-petsc/c/include -I/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/include -I/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/fc/externalpackages/git.hpddm/include /home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/fc/externalpackages/git.hpddm/interface/hpddm_petsc.cpp -shared -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/c/lib -L/home/yim/FreeFem-install-dev/ff-petsc/c/lib -lslepc -o /home/yim/FreeFem-install-dev/ff-petsc/c/lib/libhpddm_petsc.so > ${PETSC_ARCH}/lib/petsc/conf/hpddm.log 2>&1 || \ (echo "**************************ERROR*************************************" && \ echo "Error building HPDDM. Check ${PETSC_ARCH}/lib/petsc/conf/hpddm.log" && \ echo "********************************************************************" && \ touch ${PETSC_ARCH}/lib/petsc/conf/hpddm.errorflg && \ exit 1) hpddm-build: hpddm-install: hpddmbuild slepcbuild: @echo "*** Building slepc ***" @${RM} -f ${PETSC_ARCH}/lib/petsc/conf/slepc.errorflg @(cd /home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/fc/externalpackages/git.slepc && \ SLEPC_DIR=/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/fc/externalpackages/git.slepc PETSC_DIR=/home/yim/FreeFem-install-dev/ff-petsc/c PETSC_ARCH="" /usr/bin/python3 ./configure --with-clean --prefix=/home/yim/FreeFem-install-dev/ff-petsc/c && \ SLEPC_DIR=/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/fc/externalpackages/git.slepc PETSC_DIR=/home/yim/FreeFem-install-dev/ff-petsc/c PETSC_ARCH=installed-arch-linux2-c-opt-complex ${OMAKE} SLEPC_DIR=/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/fc/externalpackages/git.slepc PETSC_DIR=/home/yim/FreeFem-install-dev/ff-petsc/c PETSC_ARCH=installed-arch-linux2-c-opt-complex ) > ${PETSC_ARCH}/lib/petsc/conf/slepc.log 2>&1 || \ (echo "**************************ERROR*************************************" && \ echo "Error building slepc. Check ${PETSC_ARCH}/lib/petsc/conf/slepc.log" && \ echo "********************************************************************" && \ touch ${PETSC_ARCH}/lib/petsc/conf/slepc.errorflg && \ exit 1) slepcinstall: @echo "*** Installing slepc ***" @(cd /home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/fc/externalpackages/git.slepc && \ SLEPC_DIR=/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/fc/externalpackages/git.slepc PETSC_DIR=/home/yim/FreeFem-install-dev/ff-petsc/c PETSC_ARCH=installed-arch-linux2-c-opt-complex ${OMAKE} install SLEPC_DIR=/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/fc/externalpackages/git.slepc PETSC_DIR=/home/yim/FreeFem-install-dev/ff-petsc/c PETSC_ARCH=installed-arch-linux2-c-opt-complex ) >> ${PETSC_ARCH}/lib/petsc/conf/slepc.log 2>&1 || \ (echo "**************************ERROR*************************************" && \ echo "Error building slepc. Check ${PETSC_ARCH}/lib/petsc/conf/slepc.log" && \ echo "********************************************************************" && \ exit 1) slepc-build: slepc-install: slepcbuild slepcinstall libmesh-build: libmesh-install: mpi4py-build: mpi4py-install: petsc4py-build: petsc4py-install: **** fc/include/petscconf.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define PETSC_ARCH "" #define PETSC_ATTRIBUTEALIGNED(size) __attribute((aligned(size))) #define PETSC_DEPRECATED_ENUM(why) #define PETSC_DEPRECATED_FUNCTION(why) __attribute((deprecated)) #define PETSC_DEPRECATED_MACRO(why) _Pragma(why) #define PETSC_DEPRECATED_TYPEDEF(why) __attribute((deprecated)) #define PETSC_DIR "/home/yim/FreeFem-install-dev/ff-petsc/c" #define PETSC_DIR_SEPARATOR '/' #define PETSC_FUNCTION_NAME_C __func__ #define PETSC_FUNCTION_NAME_CXX __func__ #define PETSC_HAVE_ATOLL 1 #define PETSC_HAVE_ATTRIBUTEALIGNED 1 #define PETSC_HAVE_BUILTIN_EXPECT 1 #define PETSC_HAVE_CXX 1 #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #define PETSC_HAVE_HPDDM 1 #define PETSC_HAVE_METIS 1 #define PETSC_HAVE_MUMPS 1 #define PETSC_HAVE_PARMETIS 1 #define PETSC_HAVE_PTHREAD 1 #define PETSC_HAVE_PTSCOTCH 1 #define PETSC_HAVE_REGEX 1 #define PETSC_HAVE_SCALAPACK 1 #define PETSC_HAVE_SO_REUSEADDR 1 #define PETSC_HAVE_SUITESPARSE 1 #define PETSC_HAVE_TETGEN 1 #define PETSC_HAVE_XMMINTRIN_H 1 #define PETSC_LIB_DIR "/home/yim/FreeFem-install-dev/ff-petsc/c/lib" #define PETSC_MPICC_SHOW "icc -I/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/include -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -L/ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker /ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib/release_mt -Xlinker -rpath -Xlinker /ssoft/spack/external/intel/2018.4/impi/2018.4.274/intel64/lib -Xlinker -rpath -Xlinker /opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -Xlinker -rpath -Xlinker /opt/intel/mpi-rt/2017.0.0/intel64/lib -lmpifort -lmpi -lmpigi -ldl -lrt -lpthread" #define PETSC_PREFETCH_HINT_NTA _MM_HINT_NTA #define PETSC_PREFETCH_HINT_T0 _MM_HINT_T0 #define PETSC_PREFETCH_HINT_T1 _MM_HINT_T1 #define PETSC_PREFETCH_HINT_T2 _MM_HINT_T2 #define PETSC_Prefetch(a,b,c) _mm_prefetch((const char*)(a),(c)) #define PETSC_REPLACE_DIR_SEPARATOR '\\' #define PETSC_SLSUFFIX "so" #define PETSC_UINTPTR_T uintptr_t #define PETSC_UNUSED __attribute((unused)) #define PETSC_USE_ISATTY 1 #define PETSC_USE_SINGLE_LIBRARY 1 #define PETSC_USE_SOCKET_VIEWER 1 #define PETSC_CLANGUAGE_C 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_SCOTCH_PARMETIS_V3_NODEND 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_CXX_INLINE inline #define PETSC_CXX_RESTRICT __restrict #define PETSC_C_INLINE inline #define PETSC_C_RESTRICT __restrict #define PETSC_FORTRAN_CHARLEN_T int #define PETSC_HAVE_C99 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_IMMINTRIN_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_HAVE_REAL___FLOAT128 1 #define PETSC_USE_COMPLEX 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_HAVE___INT64 1 #define PETSC_SIZEOF_ENUM 4 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_MMAP 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_SIGNAL_CAST #define PETSC_FORTRAN_TYPE_INITIALIZE = -2 #define PETSC_HAVE_FORTRAN_FLUSH 1 #define PETSC_HAVE_FORTRAN_TYPE_STAR 1 #define PETSC_USING_F2003 1 #define PETSC_USING_F90FREEFORM 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_DEBUGGER "gdb" #define PETSC_BLASLAPACK_UNDERSCORE 1 #define PETSC_HAVE_MKL 1 #define PETSC_HAVE_I_MPI_NUMVERSION 201800043000 #define PETSC_HAVE_MPICH_NUMVERSION 30200300 #define PETSC_HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE MPIR_CVAR_CH3 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_HAVE_MPI_GET_ACCUMULATE 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_ONE_SIDED 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_RGET 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_PTHREAD_BARRIER_T 1 #define PETSC_HAVE_SCHED_CPU_SET_T 1 #define PETSC_HAVE_SYS_SYSCTL_H 1 #define PETSC_Alignx(a,b) #define PETSC_IS_COLORING_MAX USHRT_MAX #define PETSC_IS_COLORING_VALUE_TYPE short #define PETSC_IS_COLORING_VALUE_TYPE_F integer2 #define PETSC_MPIU_IS_COLORING_VALUE_TYPE MPI_UNSIGNED_SHORT #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_CTABLE 1 #define PETSC_USE_INFO 1 #define PETSC_USE_LOG 1 #define PETSC_USE_MALLOC_COALESCED 1 #define PETSC_MEMALIGN 16 #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC__GNU_SOURCE 1 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_HAVE_SLEPC 1 #define PETSC_PYTHON_EXE "/usr/bin/python3" #endif **** fc/include/petscfix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif **** fc/include/petscpkg_version.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define PETSC_PKG_MPI_VERSION_MAJOR 3 #define PETSC_PKG_MPI_VERSION_MINOR 0 #define PETSC_PKG_MPI_VERSION_SUBMINOR 0 #define PETSC_PKG_MPI_VERSION_ PETSC_PKG_MPI_VERSION_EQ #define PETSC_PKG_MPI_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_MPI_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_MPI_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_MPI_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_MPI_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_MPI_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_MPI_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_MPI_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_MPI_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_MPI_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_MPI_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_MPI_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_MPI_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_MPI_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_MPI_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_MPI_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_MPI_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_METIS_VERSION_MAJOR 5 #define PETSC_PKG_METIS_VERSION_MINOR 1 #define PETSC_PKG_METIS_VERSION_SUBMINOR 0 #define PETSC_PKG_METIS_VERSION_ PETSC_PKG_METIS_VERSION_EQ #define PETSC_PKG_METIS_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_METIS_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_METIS_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_METIS_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_METIS_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_METIS_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_METIS_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_METIS_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_METIS_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_METIS_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_METIS_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_METIS_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_METIS_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_METIS_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_METIS_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_METIS_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_METIS_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_PARMETIS_VERSION_MAJOR 4 #define PETSC_PKG_PARMETIS_VERSION_MINOR 0 #define PETSC_PKG_PARMETIS_VERSION_SUBMINOR 3 #define PETSC_PKG_PARMETIS_VERSION_ PETSC_PKG_PARMETIS_VERSION_EQ #define PETSC_PKG_PARMETIS_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_PARMETIS_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_PARMETIS_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_PARMETIS_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_PARMETIS_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_PARMETIS_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_PARMETIS_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_PARMETIS_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_PARMETIS_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_PARMETIS_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_PARMETIS_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_PARMETIS_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_PARMETIS_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_PARMETIS_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_PARMETIS_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_PARMETIS_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_PARMETIS_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_PTSCOTCH_VERSION_MAJOR 6 #define PETSC_PKG_PTSCOTCH_VERSION_MINOR 0 #define PETSC_PKG_PTSCOTCH_VERSION_SUBMINOR 9 #define PETSC_PKG_PTSCOTCH_VERSION_ PETSC_PKG_PTSCOTCH_VERSION_EQ #define PETSC_PKG_PTSCOTCH_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_PTSCOTCH_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_PTSCOTCH_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_PTSCOTCH_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_PTSCOTCH_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_PTSCOTCH_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_PTSCOTCH_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_PTSCOTCH_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_PTSCOTCH_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_PTSCOTCH_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_PTSCOTCH_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_PTSCOTCH_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_PTSCOTCH_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_PTSCOTCH_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_PTSCOTCH_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_PTSCOTCH_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_PTSCOTCH_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_MUMPS_VERSION_MAJOR 5 #define PETSC_PKG_MUMPS_VERSION_MINOR 3 #define PETSC_PKG_MUMPS_VERSION_SUBMINOR 3 #define PETSC_PKG_MUMPS_VERSION_ PETSC_PKG_MUMPS_VERSION_EQ #define PETSC_PKG_MUMPS_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_MUMPS_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_MUMPS_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_MUMPS_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_MUMPS_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_MUMPS_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_MUMPS_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_MUMPS_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_MUMPS_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_MUMPS_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_MUMPS_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_MUMPS_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_MUMPS_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_MUMPS_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_MUMPS_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_MUMPS_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_MUMPS_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_SUITESPARSE_VERSION_MAJOR 5 #define PETSC_PKG_SUITESPARSE_VERSION_MINOR 7 #define PETSC_PKG_SUITESPARSE_VERSION_SUBMINOR 1 #define PETSC_PKG_SUITESPARSE_VERSION_ PETSC_PKG_SUITESPARSE_VERSION_EQ #define PETSC_PKG_SUITESPARSE_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_SUITESPARSE_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_SUITESPARSE_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_SUITESPARSE_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_SUITESPARSE_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_SUITESPARSE_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_SUITESPARSE_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_SUITESPARSE_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_SUITESPARSE_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_SUITESPARSE_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_SUITESPARSE_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_SUITESPARSE_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_SUITESPARSE_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_SUITESPARSE_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_SUITESPARSE_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_SUITESPARSE_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_SUITESPARSE_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_HPDDM_VERSION_MAJOR 2 #define PETSC_PKG_HPDDM_VERSION_MINOR 0 #define PETSC_PKG_HPDDM_VERSION_SUBMINOR 6 #define PETSC_PKG_HPDDM_VERSION_ PETSC_PKG_HPDDM_VERSION_EQ #define PETSC_PKG_HPDDM_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_HPDDM_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_HPDDM_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_HPDDM_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_HPDDM_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_HPDDM_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_HPDDM_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_HPDDM_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_HPDDM_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_HPDDM_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_HPDDM_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_HPDDM_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_HPDDM_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_HPDDM_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_HPDDM_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_HPDDM_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_HPDDM_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #endif Attempting to save configure hash file: fc/lib/petsc/conf/configure-hash Saved configure hash file: fc/lib/petsc/conf/configure-hash Configure Actions These are the actions performed by configure on the filesystem ----------------------------------------------------------------- Framework: Directory creation : Created the external packages directory: /home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/fc/externalpackages RDict update : Substitutions were stored in RDict with parent None File creation : Created makefile configure header fc/lib/petsc/conf/petscvariables File creation : Created makefile configure header fc/lib/petsc/conf/petscrules File creation : Created configure header fc/include/petscconf.h File creation : Created C specific configure header fc/include/petscfix.h File creation : Created configure pkg header fc/include/petscpkg_version.h SLEPC: Download : Downloaded SLEPC into /home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/fc/externalpackages/git.slepc HPDDM: Download : Downloaded HPDDM into /home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4/fc/externalpackages/git.hpddm PETSc: Build : Set default architecture to fc in lib/petsc/conf/petscvariables File creation : Created fc/lib/petsc/conf/reconfigure-fc.py for automatic reconfiguration Compilers: C Compiler: mpiicc -fPIC -O3 -mtune=native Version: icc (ICC) 18.0.5 20180823 C++ Compiler: mpiicpc -O3 -mtune=native -fPIC Version: icpc (ICC) 18.0.5 20180823 Fortran Compiler: mpiifort -fPIC -O3 -mtune=native Version: ifort (IFORT) 18.0.5 20180823 Linkers: Shared linker: mpiicc -shared -fPIC -O3 -mtune=native Dynamic linker: mpiicc -shared -fPIC -O3 -mtune=native Libraries linked against: -lquadmath -lstdc++ -ldl make: Version: 3.82 /usr/bin/gmake BlasLapack: Intel MKL Version: INTEL_MKL_VERSION Library: -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r -L/home/yim/FreeFem-install-dev/ff-petsc/r -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread uses 4 byte integers MPI: Version: 3 Mpiexec: mpiexec I_MPI_NUMVERSION: 201800043000 MPICH_NUMVERSION: 30200300 pthread: cmake: Version: 3.14.4 /ssoft/spack/humagne/v1/opt/spack/linux-rhel7-x86_E5v4_Mellanox/gcc-4.8.5/cmake-3.14.4-kaggpee57xa4of7juzpykjw2wod4yxeh/bin/cmake metis: Version: 5.1.0 Includes: -I/home/yim/FreeFem-install-dev/ff-petsc/r/include Library: -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lmetis parmetis: Version: 4.0.3 Includes: -I/home/yim/FreeFem-install-dev/ff-petsc/r/include Library: -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lparmetis PTScotch: Version: 6.0.9 Includes: -I/home/yim/FreeFem-install-dev/ff-petsc/r/include Library: -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lptesmumps -lptscotchparmetis -lptscotch -lptscotcherr -lesmumps -lscotch -lscotcherr regex: MUMPS: Version: 5.3.3 Includes: -I/home/yim/FreeFem-install-dev/ff-petsc/r/include Library: -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord scalapack: Library: -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lscalapack SuiteSparse: Version: 5.7.1 Includes: -I/home/yim/FreeFem-install-dev/ff-petsc/r/include Library: -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig hpddm: Version: 2.0.6 Includes: -I/home/yim/FreeFem-install-dev/ff-petsc/c/include slepc: tetgen: Includes: -I/home/yim/FreeFem-install-dev/ff-petsc/r/include Library: -Wl,-rpath,/home/yim/FreeFem-install-dev/ff-petsc/r/lib -L/home/yim/FreeFem-install-dev/ff-petsc/r/lib -ltet Language used to compile PETSc: C PETSc: PETSC_ARCH: fc PETSC_DIR: /home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4 Scalar type: complex Precision: double Support for __float128 Integer size: 4 bytes shared libraries: enabled Memory alignment from malloc(): 16 bytes xxx=========================================================================xxx Configure stage complete. Now build PETSc libraries with: make PETSC_DIR=/home/yim/FreeFem-sources-develop/3rdparty/ff-petsc/petsc-3.13.4 PETSC_ARCH=fc all xxx=========================================================================xxx ================================================================================ Finishing configure run at Tue, 25 Aug 2020 12:58:19 +0200 ================================================================================